Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01599 ATGTCAGGTGGCCCTATTTCTCAGGATTGGGAACCAGTCGTCATCCGCAAGAAAGCCCCCAACGCCGCCGCCAAGAAGGATGAGAAAGCCGTTAACGCCGCCCGCCGTGCCGGCGCCGATATCGATACGGTTAAGAAATATAATGCTGCGACAAATAAAGCTGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGAGGATACAGAGAATCTAGCTCATGATCGTGTACCAACTGAACTGAAGAAGGCTATAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAATCATCAATGAAAAGCCTCAAGTGATCCAAGAGTACGAGTCAGGGAAAGCCATTCCAAATCAGCAGATAATTGGCAAGTTGGAGAGAGCCCTTGGAGCTAAACTGCGTGGCAAGAAATGA 426 0.4812 MSGGPISQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGADIDTVKKYNAATNKAASSSTSLNTKRLDEDTENLAHDRVPTELKKAIMQARMDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01599 141 FunFam Multiprotein bridging factor 1 70 141 - -
Vifa6g01599 141 ProSiteProfiles Cro/C1-type HTH domain profile. 86 140 IPR001387 -
Vifa6g01599 141 SMART mbf_short4 85 140 IPR001387 -
Vifa6g01599 141 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 8 141 - -
Vifa6g01599 141 MobiDBLite consensus disorder prediction 51 76 - -
Vifa6g01599 141 Gene3D - 70 141 IPR010982 GO:0003677
Vifa6g01599 141 SUPERFAMILY lambda repressor-like DNA-binding domains 79 137 IPR010982 GO:0003677
Vifa6g01599 141 Pfam Multiprotein bridging factor 1 8 78 IPR013729 -
Vifa6g01599 141 CDD HTH_XRE 84 134 IPR001387 -
Vifa6g01599 141 Pfam Helix-turn-helix 86 136 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01599 Vifa-Chr6 592356787 592359131 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vifa6g01599 MBF1 6.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01599 K03627 - atri:130817989 234.187