Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01594 ATGGCCAGCACCAGCACCAGCATAACCTCTTCAACTCCAAAAAGAAATTATTACTATGATGTGTTTGTGAGCTTTAGAGGTAAAGATACTCGCTTCAACTTCACTGATCATCTCCTTGCTTCCCTCCAAAGAAAAGGTATTTATGCATTCAGGGATGACACTAAGCTCAACAAAGGTGAGTCCATAGCACCTGAGCTCCTTCAAGCAATCGAAAACTCTCAGATTTTCATCCTAGTTTTCTCTAAGAACTATGCTTCCTCAACTTGGTGCTTGAGAGAATTGGAACACATGCTTCTTCACTGCCGTCAACCATCGGTAAAACGTATTCTGCCTGTTTTCTATGATGTTGATCCTTCTGACGTGAGACATCAAAAAGGTACTTATGGTGAAGCCTTAGCTAAACATGAACAAAGATTCCAACAAGATTTTGAGAAGGTGCGAAGATGGAGGGCAGCTCTAGCACAAGTCGCAGATCTCTCTGGCTGGGATGTGCGTTATAAACCACAACATGCAGAGATTGAAAAGATTGTTGAAGAGATTATAAATATCTTAGATTACAAGTTTTCAAGTCTTCCAAAGGACTTAGTAGGGATGCACTCTCCTATACACGAATTAGAAAAGCATTTACTTTTGGACTCACTTGATGATGTCCGCGTTGTAGGAATTTGTGGGATGGGTGGAATAGGAAAGACAACTCTTGCTACTGCTTTATACAACAAAATCTCTCATCAATTTGATGTGTGCTGCGTTATTGACGATTTAAGCAAAACTTATAGGCAAGATGGTCCGATCAGTGCACGAAATCAAATTCTACTTCAAACTGTTGGTGATCAACAGCTTCAAACATGCAATTCTTACGACACATCTAACTTGATACGAAGTAGGCTACAACGTGTAAAGGCCCTTATAATTATTGACAATGTTGATAATGTTGAGCAACTTGAGAAATTAGATGTGGATCGTGAATGGTTAGGTCAGGGGAGTAGAATAATTATAATTTCTAGAGATGAGCATATATTGATAGAGTATGGAGTGGATTTTGTTTACAAAGTTCCACTCTTGAATGAAAAAAACTCTCTTCAATTACTAAGTCGAAAAGCTTTTAAACTTGATCATATTGTGAGTGGTTATGATAAGTTGGCATTTGACATACTACATTATGCAAAAGGCTTGCCACTGGCAATTAAAGTATTGGGTTCATTTTTGTTTGGTCGTAATATCTCTGAATGGGAAAGTGCATTGGCCAGATTGAGAGAAAGTCCAAACAAAGATATCATGGATGTGTTGCGATTAAGTTTTGATGGGTTGGAGAAAACAGAAAAGGAAATATTTCTTCATATTGCCTGTTTTTTCATCTTTGGCAATGAAGAATATGTTACGAATGTTCTTAATTGTTGTGGATTTCAAGCTGTTATTGGATTGAGAGTTCTAATTGATAAATCACTTATAAGCTCAACAAGATCTTATATTGAAATGCATGGTTTGTTGATTCAATTGGGCAAACTAATAGTTCAAGAAAAATCAAGAAAGTGGAGCAGGGTGTGGCTCCATGAACAGTTTTACAATGTTGAGTCAAAGAATATGGAAAAGAAGGTTGAAGCCATTTGTTATGAAAGACCTATTCATCTAATGACCATGGGCGACATGTTGTCAAAAATGAGTCGTCTAAGATTGCTCATAATGAAGGGAGATAAATTTTTAGGAAACCTCAGTTGTCTTTCTAATGTGTTAAGATATGTGGAGTGGAATAGATATCCTTTCAAGTATTTGCCATCAAATTTTCAACCCAATCAACTTGTTGAATTGATCTTGAGGTCCAGCAACATCAAACAACTATGGAAAGACAAGAAGTATTTTCCTAAGTTGAGAAGTTTGGATTTGAGCCACTCAAAAAATCTAAGAAAGATGCCAAATTTTGGAGATATCCCAAATCTTGAGCGACTAAGTTTTGAAGGATGTATAAAACTGGTGAAGATGGATCCATCTATTGGAGTTCTAAAAAAGCTTGTTTTCTTGAGTTTGAAAGATTGCAAAAATTTAGTTAGCGTACCAAACAACATATTTAGTCTCAGCTCTCTTGAATGTGTAAATCTTTCGGGGTGTCCCAAAATGTTTAAGAATCAAAGGAGTCTGAATATAAGTGGAAACGCGTCACATTCCCAATCAACAACGTCCTCCATCTTGAAATGGACAGCATTTCGTTACCATTCCTTGTACTCCCGCGCACACAAAGATTTAGCTAGTTGTTTGTTGCCTTCCTTGCTTAGCTTCTGTAGCTTGGTTGAACTTGATATTAGTTTTTGTGGTCTAAGCCAACTCCCTGATGCAATTGGGTGTTTACGTTGGCTAGAAGAATTAAACTTAGGAGGAAACAATTTTGTAACGTTGCCTAGTCTGAAGGAGCTTTACAGACTTGCGTTTCTAAACTTGGAGCATTGCAAACTCTTGGAATCTTTGCCTGAACTTCCTTTTCCAGCTGCTATCGAGCGGGACCTTCGAAAGAACAAATATAGGAATAGGAAAGGATTGGTCATTTTCAATTGTCCTAAATTGAGTGAGAAGGAACTTGGCAGTACTATCAATTTTTCATGGATGACAGAGTTTATTCAGGCAAACCAAGTATTCTATTCAATTTATGACGAGATTTATTTTGTAGTTCCAAGAAGTGAAATACCAAGTTGGTGCAACAATCAGAGTGAGGGTCACTTAATAAGAATAGATCTATCTCCCATTATGCTCGACAATGACAATAATATCAGTGGCATTGCTTGTTGTGCAATATTTTCTGTTGCACCTGTTGACCCAACTATGACCACATATGCACAACGACCTGAAATGCAACTACTTATTTATAATACTTTAATTAAGATTAGGTGGGATAGGATCATTCCAATAACTCTTGAAAGTGATCTTATTGAGATCAAATCAGATCACATGTGCCTAATCTATTACCCTCTGGAATCAGTCTTTCAATTTCTCAAGTCTATAGACAAAACTCACACCCACTTTGATCAGTTTAAGCTGTATGTTAAAATTGATAATGGAAAAGGTACGGAACTCAATTGTACGCATTTGAAGGTTCAGAAGTGCGGGTATCATTGGGTAAATAAACAAGATTGTGCGCCGCTGCTGTAA 3135 0.3722 MASTSTSITSSTPKRNYYYDVFVSFRGKDTRFNFTDHLLASLQRKGIYAFRDDTKLNKGESIAPELLQAIENSQIFILVFSKNYASSTWCLRELEHMLLHCRQPSVKRILPVFYDVDPSDVRHQKGTYGEALAKHEQRFQQDFEKVRRWRAALAQVADLSGWDVRYKPQHAEIEKIVEEIINILDYKFSSLPKDLVGMHSPIHELEKHLLLDSLDDVRVVGICGMGGIGKTTLATALYNKISHQFDVCCVIDDLSKTYRQDGPISARNQILLQTVGDQQLQTCNSYDTSNLIRSRLQRVKALIIIDNVDNVEQLEKLDVDREWLGQGSRIIIISRDEHILIEYGVDFVYKVPLLNEKNSLQLLSRKAFKLDHIVSGYDKLAFDILHYAKGLPLAIKVLGSFLFGRNISEWESALARLRESPNKDIMDVLRLSFDGLEKTEKEIFLHIACFFIFGNEEYVTNVLNCCGFQAVIGLRVLIDKSLISSTRSYIEMHGLLIQLGKLIVQEKSRKWSRVWLHEQFYNVESKNMEKKVEAICYERPIHLMTMGDMLSKMSRLRLLIMKGDKFLGNLSCLSNVLRYVEWNRYPFKYLPSNFQPNQLVELILRSSNIKQLWKDKKYFPKLRSLDLSHSKNLRKMPNFGDIPNLERLSFEGCIKLVKMDPSIGVLKKLVFLSLKDCKNLVSVPNNIFSLSSLECVNLSGCPKMFKNQRSLNISGNASHSQSTTSSILKWTAFRYHSLYSRAHKDLASCLLPSLLSFCSLVELDISFCGLSQLPDAIGCLRWLEELNLGGNNFVTLPSLKELYRLAFLNLEHCKLLESLPELPFPAAIERDLRKNKYRNRKGLVIFNCPKLSEKELGSTINFSWMTEFIQANQVFYSIYDEIYFVVPRSEIPSWCNNQSEGHLIRIDLSPIMLDNDNNISGIACCAIFSVAPVDPTMTTYAQRPEMQLLIYNTLIKIRWDRIIPITLESDLIEIKSDHMCLIYYPLESVFQFLKSIDKTHTHFDQFKLYVKIDNGKGTELNCTHLKVQKCGYHWVNKQDCAPLL 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01594 1044 Pfam NB-ARC domain 204 423 IPR002182 GO:0043531
Vifa6g01594 1044 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 706 IPR044974 GO:0006952
Vifa6g01594 1044 SMART till_3 18 159 IPR000157 GO:0007165
Vifa6g01594 1044 PRINTS Disease resistance protein signature 388 402 - -
Vifa6g01594 1044 PRINTS Disease resistance protein signature 617 633 - -
Vifa6g01594 1044 PRINTS Disease resistance protein signature 295 309 - -
Vifa6g01594 1044 PRINTS Disease resistance protein signature 219 234 - -
Vifa6g01594 1044 Gene3D - 13 185 IPR035897 -
Vifa6g01594 1044 SUPERFAMILY L domain-like 556 830 - -
Vifa6g01594 1044 Gene3D Ribonuclease Inhibitor 706 863 IPR032675 -
Vifa6g01594 1044 Gene3D Ribonuclease Inhibitor 539 705 IPR032675 -
Vifa6g01594 1044 Gene3D - 353 437 IPR042197 -
Vifa6g01594 1044 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 186 - -
Vifa6g01594 1044 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 162 IPR035897 -
Vifa6g01594 1044 ProSiteProfiles TIR domain profile. 17 184 IPR000157 GO:0007165
Vifa6g01594 1044 SUPERFAMILY "Winged helix" DNA-binding domain 424 519 IPR036390 -
Vifa6g01594 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 447 IPR027417 -
Vifa6g01594 1044 Pfam TIR domain 19 182 IPR000157 GO:0007165
Vifa6g01594 1044 ProSiteProfiles Leucine-rich repeat profile. 782 803 IPR001611 GO:0005515
Vifa6g01594 1044 Pfam C-JID domain 887 1039 IPR045344 -
Vifa6g01594 1044 Gene3D - 186 346 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01594 Vifa-Chr6 583474881 583478451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01594 19 798 WRKY Transcription Factor Family AT4G12020 30.307 2.33e-81 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01594 - - tpra:123883787 1167.53