Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01593 ATGGCCTGCACCAGCAATAGCAGCTCTTCATCTCTGGTGAAATCTCCAAAGAAAAATTATTATGACGTATTTGTGAGCTTCAGGGGTAAAGACACACGCTGCAACTTCACTGATCATCTTTTTGCTGCCCTCCAGAGAAAAGGTATTCTTGCATTCAGGGATGACACTAAGCTGAAGAAAGGTGAATCCATAGCACCTGAGCTCTTTCGAGCAATCCAAGACTCTCAGATTTTTGTTGTGATATTTTCAAAGAACTATGCTTCTTCAACTTGGTGCTTGCGAGAATTGGAATGCATCCTTCTTCAGTGCAGTCAACCACCGGAAAAACGTGTTTTGCCTGTTTTCTATGATGTTGATCCTTCTGAGGTAAGACATCAAAAAGGACTTTATGGTGATGCCTTTTCTAAACATGAACAAAGATTCCAACAAAACTCTCAGATGGTTCAAAAATGGAGGTCAGCTCTAGCACAAGTTGCAGATCTCTCTGGCTGGGATCTACGTCATAAGCCACAACATGCAGAGATTGAAAAGATTGTTGAAGAGATTATAAGTTTATCAGGAATTTGTGGGATGGGTGGAATAGGAAAGACAACTCTTGCTACTGCTTTATACAACAAAATCTCTCATCAATTTGATATGTGCTGCCTTATTGACGATTTAAGCAAAAGTTTTAGACAAGATGGTCCAATTAGTGCACAAAAGCAAATTCTACTTCAAACTGTAGGCGATCAACTGCTTCTAACATGCAATTCTTACAACACATCTAACTTGATACGAAGTAGGCTACAACGTGTAAAGGCTCTTATAATTATTGACAATGTTGATAATGTTGAGCAACTTGAGAAATTAGATGTGGATCGTGAATGGTTAGGTCAGGGGAGTAGAATAATTATAATTTCTAGAGATGAGCATATATTGATAGAGTATGGAGTGGATTTTGTTTACAAAGTTCCACTCTTGAATGAAAAAAACTCTCTTCAATTACTAAGTCGAAAAGCTTTTAAACTTGATCATATTGTGAGTGGTTATGATAAGTTGGCATTTGGCATACTAGATTATGCAAAAGGCTTGCCACTGGCAATTAAAGTACTGGGTTCATTTTTGTTTGGTCGTAATATCACTGAATGGGAAAGTGCATTGGCCAGATTGAGAGAAAGTCCAAATAAAGATATCATGGATGTGTTGCGATTAAGTTTTGATGCTTTGGAGAAAACAGAAAAGGAAATATTTCTTCATATTGCTTGTTTTTTCAACATTGAAAGTGTGGAATATGTTACAAATGTTCTTAATTGTTGTGGATTTCATGCTGAAATTGGATTGAGAGTTCTAGTTGATAAATCACTTATAAGCCTTATGGGAGAAACTCATATTAAAATGCACGGTTTGTTGATTGAGATGGGCACAAAAATAATTCAAGAAAAATCAAGAAAGTGGAGCAGGGTGTGGCTCCAGGAACATTTCAACAATGTTAAGTTTGAGAATATGGAAAAGAAGGTTGAAGCCATTTGTAAGAAAAGAGGAAGAGATTTAATGATCATGGGTGAAACATTGTCAAAAATGAGCCATCTAAGATTGCTCATACTGTCGGGAGTTAATTTGGTAGGAAATATCAATTATCTTTCTAACGAGTTAAGATATATGGAGTGGGATAGATATCCTTTCAAGTATCTGCCATCAAGGTTTCAGCCTAATCAACTTGTTGAATTGATCTTGACGTGCAGCAACATTAAACAACTATGGAAAGACAAGAAGTATTTTCCCCATTTGAGATTTTTGAATATGAGCCACTCAAAAGATCTAAGAAAAATGCCCGATTTTAGAGATATCCCAAATCTTGAGGAATTAAATTTTGAAGGATGTGTGAAACTCCTGCAAATCGATCCATCTATTGGGGTTCTAAGAAAGCTTGTTGTCTTGAGTTTGAAAGATTGCACAGATTTAATTAGCATACCATTCAACATATTTAGTCTCGGCTCTCTTGAATGGGTAAATCTTTCGGGGTGTCACAAAATTTGTAAGAATCAAAGGATTTTCAATAGAAGTGGAAACGCATCACATTCCCAATCAACTACCTCCTCCGTCATGAAATGGACAGCATTTCGTTACCATTCCTTGTTCTCTCGCGCACACAAAGATTTAGCTAATTGTTTGTTGCCTTTCTTTGTTAGCTTCTCTAGCTTGGTTCAACTTGATATTAGTTTTTGTGGTCTAAGCCAACTCCCTGATGCAATTGGATGTTTACGTTCCCTAGAAGAATTAAATTTAGGGGGAAACAATTTTGTAACATTGCCTAGCCTGGAGGAGCATTACAGACTTGCATTTTTAAATTTGGAGCATTGCAAACTCTTAGAATCTTTGCCTCAACTTCCTTTTCCTACTACTATCGATCCGGGCCTTCGAAAGAACAAATATATGGAAAAAAAAGGATTGGTCATTTTCAATTGTCCTAAATTGAGTGAGAGGGAGCTTGGCAGTACTATCAGTTTTTCATGGATGACACATTTTATTCGGGCAAACCAAGTATTCACTTCAATCAATGATGAGATTGCTTTTGTAGTTCCAGGAAGTGAAATACCAAGTTGGTGCAACAATCAAAGTGAGGGTGATTCAATAAGTATAGATCTATCTCCCATTATATCTGGCAATGACAATAATTTCATTGGTATTGCTTTGTGTGCAATATTTTCTGTTGCACCTCTTCACCCAACTATGACAACATATGCACAAAGACCTGGAATAGATATACAAATTTTTAATAGTGTAACTTGTAAAACGTGGTACAGCACCATTCCAGTGATTCTTGAAAGAGATCTCATTGAGATTAAATCAGATCACATGTGCCTAATCTATTACTCTTTGGAAGCAATCATTTATATTATGATGTATTCTGACGAAACTCTCAGCTATGTTGATCATTTTAAGCTGCATGTTGAAATTATGGATAACGAAGATATGGATCTGAAGGTTCAGAAGTGCGGGTATGATTGGATATATAAACAAGATCATGCATTGCCGCTGAAACTCCTTAGCTCAGAAGTACAAGTTTTTGGCAATTGA 3057 0.366 MACTSNSSSSSLVKSPKKNYYDVFVSFRGKDTRCNFTDHLFAALQRKGILAFRDDTKLKKGESIAPELFRAIQDSQIFVVIFSKNYASSTWCLRELECILLQCSQPPEKRVLPVFYDVDPSEVRHQKGLYGDAFSKHEQRFQQNSQMVQKWRSALAQVADLSGWDLRHKPQHAEIEKIVEEIISLSGICGMGGIGKTTLATALYNKISHQFDMCCLIDDLSKSFRQDGPISAQKQILLQTVGDQLLLTCNSYNTSNLIRSRLQRVKALIIIDNVDNVEQLEKLDVDREWLGQGSRIIIISRDEHILIEYGVDFVYKVPLLNEKNSLQLLSRKAFKLDHIVSGYDKLAFGILDYAKGLPLAIKVLGSFLFGRNITEWESALARLRESPNKDIMDVLRLSFDALEKTEKEIFLHIACFFNIESVEYVTNVLNCCGFHAEIGLRVLVDKSLISLMGETHIKMHGLLIEMGTKIIQEKSRKWSRVWLQEHFNNVKFENMEKKVEAICKKRGRDLMIMGETLSKMSHLRLLILSGVNLVGNINYLSNELRYMEWDRYPFKYLPSRFQPNQLVELILTCSNIKQLWKDKKYFPHLRFLNMSHSKDLRKMPDFRDIPNLEELNFEGCVKLLQIDPSIGVLRKLVVLSLKDCTDLISIPFNIFSLGSLEWVNLSGCHKICKNQRIFNRSGNASHSQSTTSSVMKWTAFRYHSLFSRAHKDLANCLLPFFVSFSSLVQLDISFCGLSQLPDAIGCLRSLEELNLGGNNFVTLPSLEEHYRLAFLNLEHCKLLESLPQLPFPTTIDPGLRKNKYMEKKGLVIFNCPKLSERELGSTISFSWMTHFIRANQVFTSINDEIAFVVPGSEIPSWCNNQSEGDSISIDLSPIISGNDNNFIGIALCAIFSVAPLHPTMTTYAQRPGIDIQIFNSVTCKTWYSTIPVILERDLIEIKSDHMCLIYYSLEAIIYIMMYSDETLSYVDHFKLHVEIMDNEDMDLKVQKCGYDWIYKQDHALPLKLLSSEVQVFGN 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01593 1018 Gene3D Ribonuclease Inhibitor 506 683 IPR032675 -
Vifa6g01593 1018 Gene3D Ribonuclease Inhibitor 684 830 IPR032675 -
Vifa6g01593 1018 Pfam TIR domain 21 182 IPR000157 GO:0007165
Vifa6g01593 1018 Gene3D - 166 311 IPR027417 -
Vifa6g01593 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 413 IPR027417 -
Vifa6g01593 1018 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 164 IPR035897 -
Vifa6g01593 1018 Pfam NB-ARC domain 186 389 IPR002182 GO:0043531
Vifa6g01593 1018 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 186 - -
Vifa6g01593 1018 Pfam C-JID domain 853 1001 IPR045344 -
Vifa6g01593 1018 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Vifa6g01593 1018 SUPERFAMILY L domain-like 459 791 - -
Vifa6g01593 1018 Gene3D - 2 159 IPR035897 -
Vifa6g01593 1018 ProSiteProfiles Leucine-rich repeat profile. 749 770 IPR001611 GO:0005515
Vifa6g01593 1018 Gene3D - 319 403 IPR042197 -
Vifa6g01593 1018 SMART till_3 20 161 IPR000157 GO:0007165
Vifa6g01593 1018 PRINTS Disease resistance protein signature 261 275 - -
Vifa6g01593 1018 PRINTS Disease resistance protein signature 631 647 - -
Vifa6g01593 1018 PRINTS Disease resistance protein signature 354 368 - -
Vifa6g01593 1018 PRINTS Disease resistance protein signature 185 200 - -
Vifa6g01593 1018 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 671 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01593 Vifa-Chr6 583409745 583413212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01593 174 786 WRKY Transcription Factor Family AT5G45050 32.296 1.30e-72 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01593 - - tpra:123883787 1102.43