Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01592 ATGGCATTGGCTTGCAATAACCTCCAAAGTGGCTGTTCAGCTAGTATGAGATGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAAGACACCCGCAACAATTTCACCGATCACCTCTTTGGCGCTCTTCATAATAAAGGCATTGTTTCCTTCAGAGATGACACAAAGCTCAAGAAAGGGGAACATATATCATCTGAACTTCTGCAAGCTATTCAAGGATCCCGTATTTTGATTGTAATCTTCTCAACAAACTATGCTTCTTCCACATGGTGCTTGCAAGAACTCGCAAAAATTGCTGACTGCATTCAAGTTCCAGGACAATCTGTTCTACCTATTTTCTATGATGTCAGTCCTTCTGAGGTACGAAAACAAAGCGGAGATTACGAAAAAGCCTTTCAAGAGCATGAAGAAAAGTCCAAAGCAACTGAAGTGCAAAGATGGAGGGGAGCCCTAAAACAAGTAGCCGATCTCTCTGGTTGCGATGTAAGGGATAAGCCACAATATGCTGAGATTGGAAAAATTATTAAAGAGGTAACATGCTTATTGGGAAACAAACCTTCAATTTTACCTGCCGATATAGTTGGGATGAACTCGCCAGTGGAAGAACTAGAAAACCTTCTGGTTTTGGACTCAGATGATGTTCGAGTTGTAGGGATTTGTGGAATGGGTGGAATAGGGAAGACAACTCTTGCTACTGCCTTATATGCTAGAATCTCCAATCAATTTGATGCTTGCTGCTTTATTCATGATGTAAGTAAAATTTATGGAGATCATGGTCCAATTGGAGTACAAAAGCAACTTCTTTGTCAAACTCTAAATGAAGAAAATCTTCAGATATCCAATCTTTATATGGCATCTAATTTGATTCGAACTAGGCTATGTCAAATAAAATCCCTTGTTGTTCTTGATAATGTTGATGAAGGTGAACAACTGGATAAATTGTTGATGAAAAGAGAATGGCTAGGCACAGGGAGTAGAATAATCATTATTTCTAGAGATGGGCATATCTTGAGAGAGCATGGAGTAGATGAAGTATACAGAGTTCGACTCTTGGATCGTAAAGATGCCCTGCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCATGAGCGGTTACATATACTTGACATATGATGTGCTAAACTATGTTGGTGGCCTTCCACTAGCAATTAAAGTGTTGGGCTCATTTCTGTATGGCCGAGATGTCTCTGAGTGGAGAAGTGCATTGTCAAGATTAAGAGATAATCCAAGGATAGATATTATGAATGTACTCCGAATGACTTTTGATGGATTAGAGGATACAGAAAAGGATATATTTCTAGATATTGCTTGTTTCTTTAATAGATACAGCGAGACACGCCTGAAGAAAATTTTAGATTTCCGTGGATTTCATCCTGAAATTGGTTTAAGAGTTCTCATTGATAAATCGTTTATAACCCGTGAGAAGCAGATAATTTGTATGCATGATTTGTTAAGAGAACTGGGAAAGAGTATCATTAGAGAAATATCACCCAAAGAACCAAGAAAGTGGAACAGGTTGTGGGACTACAAGGATGTCCACAATGTTATCTCAGAAAACATGGCAACAGAAAACCTTGAAGCCATAGTTATGCAGTATGATTCAGAAAATTGTAAAGAAATACAAAAGATAACATTGAGAGCCGAAGCTTTAGCAAAAATGAGTCGCCTTAAATTGCTCAAGCTGATGATGTTCAATTTCTCAGGAAATGTCAATTTTCTTTCAAGTGAATTGGGGTATCTGTATTGGGATAGATATCATGTCTCTAGTTTACCATCAAGTTTTCAGCCCTATAAACTTGTTGAATTGGTCCTACGACACAGCAACATTAAGAAACTATGGGAGGGCACAAAGAATCTACCTAACTTGACACTTATTGATCTCTCTCACTCAAAAAATCTTATTATGATGCCAAATTTTGAGGACATTCCAAATCTTGAGAGGCTCGATCTTGAAGGATGTATAAAACTCGTGAAGATTGATCCATCTATTGGTACCTTAAGAAGGCTTTCCAGATTAAATTTGAAAAATTGTATAAATCTGATCAGTATTCCTAACAACATTTTTGGTCTGAATTCTCTTGAAGATCTAAGTCTCTCAGATTCAGTTGGTTTACTGTTGCCTTCATTGTCTTGTTTGTCACGTTTGCAATATCTTGACCTGAGTTTCTGCAATCTTCTTCAAACCCCTTATGCAATTGGGTTGTTACATTGCTTAGAAACCCTATATTTGGGGGGTAACAATTTTGTGACACTGCCTTCTAGCATCAAGGAACTTTCCAAACTTAGAAAATTAAACTTGGAGCACTGTAAGCAGCTGAAATATTTGCTTGAGCTCCCATCAAAGAATGTCTTGTCAGTAAGAAGAACAGCACTTTCTTACCATGATGCTGAATTTAATATTTTTGACTGCCCGAGTTTAATTGATATTGAATGCTGTTATGGAATGGCTTTTTCTTGGATGATACGACTCCTTCAGGTGCACATGCAATCCGAGATCCCAATGGAACAGATTAAAATTGTTATTCCCCAAACTGAAATTCCAAAGTGGTTCAACAAACAAAATGTAGGTAGTTCAATGAGCATCGATCCATCACCCTTTATAACAGATCTGGTCACAGTTGAATTAGACCACTTGTTTCTAACCTTTTTCAGTAGGGAGAGAGTTATTCGTAGCATGTGCTCTATAACAGAGGGATTGCATGATGATTTTAGTGGTATTGAATTAACAGCTTTAGTTTTGCACCCCCTTGGTTTGCTCTTGGAAGTAAAAAATTGTGGTTATCGTTGGATATTTAAGGAGGATTTGGAACAATTAAACCAACAAAGGAGGTACACCGGAAGTGGAAATTCCTCACTTCAGCCATATTATTGA 2898 0.3765 MALACNNLQSGCSASMRWKYDVFVSFRGEDTRNNFTDHLFGALHNKGIVSFRDDTKLKKGEHISSELLQAIQGSRILIVIFSTNYASSTWCLQELAKIADCIQVPGQSVLPIFYDVSPSEVRKQSGDYEKAFQEHEEKSKATEVQRWRGALKQVADLSGCDVRDKPQYAEIGKIIKEVTCLLGNKPSILPADIVGMNSPVEELENLLVLDSDDVRVVGICGMGGIGKTTLATALYARISNQFDACCFIHDVSKIYGDHGPIGVQKQLLCQTLNEENLQISNLYMASNLIRTRLCQIKSLVVLDNVDEGEQLDKLLMKREWLGTGSRIIIISRDGHILREHGVDEVYRVRLLDRKDALQLFCRKAFKSDDIMSGYIYLTYDVLNYVGGLPLAIKVLGSFLYGRDVSEWRSALSRLRDNPRIDIMNVLRMTFDGLEDTEKDIFLDIACFFNRYSETRLKKILDFRGFHPEIGLRVLIDKSFITREKQIICMHDLLRELGKSIIREISPKEPRKWNRLWDYKDVHNVISENMATENLEAIVMQYDSENCKEIQKITLRAEALAKMSRLKLLKLMMFNFSGNVNFLSSELGYLYWDRYHVSSLPSSFQPYKLVELVLRHSNIKKLWEGTKNLPNLTLIDLSHSKNLIMMPNFEDIPNLERLDLEGCIKLVKIDPSIGTLRRLSRLNLKNCINLISIPNNIFGLNSLEDLSLSDSVGLLLPSLSCLSRLQYLDLSFCNLLQTPYAIGLLHCLETLYLGGNNFVTLPSSIKELSKLRKLNLEHCKQLKYLLELPSKNVLSVRRTALSYHDAEFNIFDCPSLIDIECCYGMAFSWMIRLLQVHMQSEIPMEQIKIVIPQTEIPKWFNKQNVGSSMSIDPSPFITDLVTVELDHLFLTFFSRERVIRSMCSITEGLHDDFSGIELTALVLHPLGLLLEVKNCGYRWIFKEDLEQLNQQRRYTGSGNSSLQPYY 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01592 965 PRINTS Disease resistance protein signature 385 399 - -
Vifa6g01592 965 PRINTS Disease resistance protein signature 216 231 - -
Vifa6g01592 965 PRINTS Disease resistance protein signature 292 306 - -
Vifa6g01592 965 PRINTS Disease resistance protein signature 626 642 - -
Vifa6g01592 965 Gene3D - 350 434 IPR042197 -
Vifa6g01592 965 SUPERFAMILY L domain-like 503 817 - -
Vifa6g01592 965 Gene3D - 184 345 IPR027417 -
Vifa6g01592 965 SMART till_3 19 157 IPR000157 GO:0007165
Vifa6g01592 965 ProSiteProfiles TIR domain profile. 18 182 IPR000157 GO:0007165
Vifa6g01592 965 Gene3D Ribonuclease Inhibitor 713 863 IPR032675 -
Vifa6g01592 965 Pfam NB-ARC domain 199 418 IPR002182 GO:0043531
Vifa6g01592 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 444 IPR027417 -
Vifa6g01592 965 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 184 - -
Vifa6g01592 965 Pfam TIR domain 19 160 IPR000157 GO:0007165
Vifa6g01592 965 Gene3D Ribonuclease Inhibitor 531 712 IPR032675 -
Vifa6g01592 965 Pfam Leucine Rich Repeat 607 626 IPR011713 -
Vifa6g01592 965 Gene3D - 16 183 IPR035897 -
Vifa6g01592 965 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 796 IPR044974 GO:0006952
Vifa6g01592 965 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 159 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01592 Vifa-Chr6 583206152 583209647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01592 20 784 WRKY Transcription Factor Family AT4G12020 30.828 4.75e-89 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01592 - - psat:127106907 1360.13