Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01589 ATGCAAATCTTTGTGAAAGAATCATTGACTGGCAAAACTTTCAGCCTTGAGGTGGAGAGTTGTGATACCATAGACAACGTGAAAGCTAAGATCCAAGATAAAGAAGGGATTCCACCCTATCAGCAAAAGTTTATCATGTTTGGTGGAAAAAAATTGGAAGATAGAAGTAGCCTTGCTGATTACTACATCAAAAAGGAATCCATTCTATACCTTGTACTCCGAGATGTAATACAAATATTTTTCAAGACTTTAAGAAAAACCATCGCTTTGGAAGTTGAGAGTTCAGATAGAATTGATAATGTGAAAGCTCAGATTCAGGATAAGGAGGGTATTCCACCCCATGAACAAAGGCTTGTCTTTGCTGGAAGAGAATTGGAAGATAGGCGCACCCTTGCTGATTACGACATCAAAAAGGATTCGAATCTACAGCTTCTACTCCCATTGATATATGGAATGCAGATCTTTGTCAAGACTTTAAGAAAAACCATCACTTTGGAGGTTGAGAATTTAGATAGAATTGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGTATTCCAAGGTATCAACAAAGGCTTATGTTTGCAGGGAAAGAGGTTGAAGATGGTAGGACTCTAGCTGATTATTACATCCATAAGAAATCCACTCTCCATCTGGTTTTGAGATCATTTGAAGATGGCATGCAAATTGTCGTGAACAACTATACTAACAAGAGCAGCATATTTTTGGAGGTAAAAAGTTGTGATAGAATTGAGAATGTGAAGGCGAAAATAGAGGATAAAGAGGGATTTCCCGCCGCCCAACAGAGGCTAGTTTTCCATGGGAAGGGATTGGAGGATGGTCGTACTCTGGGTGATTATAATATCCAGAAGGATAACCCTTACTGGGAAAATTTATGTCCGGGGTTGAAAGCTCTCACACTATGGTTAAATTGCTGA 939 0.3898 MQIFVKESLTGKTFSLEVESCDTIDNVKAKIQDKEGIPPYQQKFIMFGGKKLEDRSSLADYYIKKESILYLVLRDVIQIFFKTLRKTIALEVESSDRIDNVKAQIQDKEGIPPHEQRLVFAGRELEDRRTLADYDIKKDSNLQLLLPLIYGMQIFVKTLRKTITLEVENLDRIDNVKAKIQDKEGIPRYQQRLMFAGKEVEDGRTLADYYIHKKSTLHLVLRSFEDGMQIVVNNYTNKSSIFLEVKSCDRIENVKAKIEDKEGFPAAQQRLVFHGKGLEDGRTLGDYNIQKDNPYWENLCPGLKALTLWLNC 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01589 312 ProSiteProfiles Ubiquitin domain profile. 228 293 IPR000626 GO:0005515
Vifa6g01589 312 SMART ubq_7 152 222 IPR000626 GO:0005515
Vifa6g01589 312 SMART ubq_7 228 311 IPR000626 GO:0005515
Vifa6g01589 312 SMART ubq_7 1 74 IPR000626 GO:0005515
Vifa6g01589 312 SMART ubq_7 77 147 IPR000626 GO:0005515
Vifa6g01589 312 FunFam Polyubiquitin-C 152 224 - -
Vifa6g01589 312 SUPERFAMILY Ubiquitin-like 1 74 IPR029071 -
Vifa6g01589 312 SUPERFAMILY Ubiquitin-like 224 293 IPR029071 -
Vifa6g01589 312 Gene3D - 152 223 - -
Vifa6g01589 312 SUPERFAMILY Ubiquitin-like 146 222 IPR029071 -
Vifa6g01589 312 ProSitePatterns Ubiquitin domain signature. 177 202 IPR019954 -
Vifa6g01589 312 PRINTS Ubiquitin signature 161 181 IPR019956 -
Vifa6g01589 312 PRINTS Ubiquitin signature 182 202 IPR019956 -
Vifa6g01589 312 PRINTS Ubiquitin signature 203 224 IPR019956 -
Vifa6g01589 312 ProSitePatterns Ubiquitin domain signature. 102 127 IPR019954 -
Vifa6g01589 312 ProSiteProfiles Ubiquitin domain profile. 77 151 IPR000626 GO:0005515
Vifa6g01589 312 Gene3D - 224 296 - -
Vifa6g01589 312 ProSiteProfiles Ubiquitin domain profile. 1 74 IPR000626 GO:0005515
Vifa6g01589 312 Gene3D - 1 76 - -
Vifa6g01589 312 Gene3D - 77 146 - -
Vifa6g01589 312 Pfam Ubiquitin family 79 146 IPR000626 GO:0005515
Vifa6g01589 312 Pfam Ubiquitin family 230 292 IPR000626 GO:0005515
Vifa6g01589 312 Pfam Ubiquitin family 154 222 IPR000626 GO:0005515
Vifa6g01589 312 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vifa6g01589 312 SUPERFAMILY Ubiquitin-like 74 148 IPR029071 -
Vifa6g01589 312 ProSiteProfiles Ubiquitin domain profile. 152 222 IPR000626 GO:0005515
Vifa6g01589 312 PANTHER UBIQUITIN 228 292 - -
Vifa6g01589 312 FunFam Polyubiquitin-C 1 75 - -
Vifa6g01589 312 FunFam Polyubiquitin-C 77 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01589 Vifa-Chr6 582058216 582059154 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01589 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 75.676 1.23e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01589 - K08770 mtr:25493109 378.252