Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01584 ATGAGTCGCAACATGAACAATTTCACGCCTTTGCCGGGGCTTCGGAGAACAGGTTCCAGAGCCTATGATGATGCTCCTCACACTTCCAGTAATACTCATGAATTCAATGAAGTTCCTGTGTTTTACAGATCTCGTCACACTACTAGAACCAATGATGATAGGAGTTTAGGTGCACAAGATCCACTGCGATTGTGGGAAATCAGAACAACTCCTACAGAACATCGTAGAACACCAAATTTTCCAGCACAACCTCATAGAAGACAACAAACTTATGTTCACAATGAAGAAATGGGAAGAAGAGGTTTCAATCCAGGTAGGCTCGGACAAATTTCCTGGCATTCACCTATAAGATCAACATCAACGCATCAAACAAACACACAAGTTCCGCATGTGATAGAAGGTTCCAAATCAACTATTTTAAGCAAGTTACGGAAAATAGTCTATAACCCTGCACCAATGCGGTTAGCTAGAAAAGTGAGCTTATATTATAGAGGCAATGCTTCAAATGATTTGAAAGAGGGTGTGAAGGAAAAGAAGGAAGATGGTATGAGATGTGCTATTTGCTTGGAAGATTTTGAGGCTAAAGAAGAAGTGATGCTTACTCCATGTAACCACATGTTTCATGAGGATTGCATTGTAACTTGGTTAACAAGCAAAGGTCAGTGTCCTGTTTGTAGGTTTGTGGTTTTTGAGGAAGTGAAGGAAAATTCATCTTCCTTTGATAGGAATGACATTGCCAATTGGGAACCTAATCACATGATCTCTGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCATTTAGACACTATGAATTAA 828 0.3998 MSRNMNNFTPLPGLRRTGSRAYDDAPHTSSNTHEFNEVPVFYRSRHTTRTNDDRSLGAQDPLRLWEIRTTPTEHRRTPNFPAQPHRRQQTYVHNEEMGRRGFNPGRLGQISWHSPIRSTSTHQTNTQVPHVIEGSKSTILSKLRKIVYNPAPMRLARKVSLYYRGNASNDLKEGVKEKKEDGMRCAICLEDFEAKEEVMLTPCNHMFHEDCIVTWLTSKGQCPVCRFVVFEEVKENSSSFDRNDIANWEPNHMISGELLSILRAMEEAFHLDTMN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01584 275 SMART ring_2 185 225 IPR001841 -
Vifa6g01584 275 MobiDBLite consensus disorder prediction 1 32 - -
Vifa6g01584 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 242 IPR013083 -
Vifa6g01584 275 SMART ringv_2 184 226 IPR011016 GO:0008270
Vifa6g01584 275 Pfam Ring finger domain 184 226 IPR001841 -
Vifa6g01584 275 FunFam RING/U-box superfamily protein 169 243 - -
Vifa6g01584 275 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 79 227 - -
Vifa6g01584 275 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Vifa6g01584 275 SUPERFAMILY RING/U-box 177 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01584 Vifa-Chr6 580496096 580497148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01584 139 269 C3H Transcription Factor Family AT3G58720 50.725 1.33e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01584 - - psat:127107286 526.168