Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01583 ATGCAAATCTTTGTGAAAACATTGACCGGCAAAACTATCACTCTTGAGGTGGAGAGTTCTGATACCATAGACAACGTGAAATCTAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAGCAAAGGCTTATCTTTGCTGGGAAACAATTGGAAGATGGTCGCACCCTTGCTGATTACAACATCCAGAAGGAATCCACTCTTCACCTTGTACTCCGATTGAGAGGTGGAATGCAGATCTTTGTCAAGACCTTGACAGGGAAGACCATCACCCTTGAGGTTGAATCCTCTGATACTATTGATAATGTCAAAGCCAAGATACAGGATAAGGAAGGTATCCCTCCTGATCAGCAGAGGCTTATATTTGCAGGGAAACAACTTGAGGACGGAAGAACCCTAGCTGATTACAACATACAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAAATTTTTGTCAAGACTTTAACAGGAAAAACTATCACTTTGGAGGTTGAGAGTTCAGATACCATTGATAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTAGCTGATTATAACATCCAGAAAGAATCCACTCTGCATCTGGTGTTGAGGCTTCGTGGGGGTATGCAAATTTTTGTCAAGACCCTTACCGGAAAGACCATAACTTTGGAGGTAGAAAGTTCTGATACAATTGATAATGTGAAGACTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAGCAGAGGCTAATTTTTGCTGGTAAGCAATTGGAGGATGGTCGTACTCTGGCTGATTATAATATACAGAAGGAATCTACTCTGCATCTTGTTCTTCGTCTGCGTGGTGGCTTCTAA 918 0.4227 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01583 305 FunFam Polyubiquitin 3 77 152 - -
Vifa6g01583 305 SMART ubq_7 1 72 IPR000626 GO:0005515
Vifa6g01583 305 SMART ubq_7 229 300 IPR000626 GO:0005515
Vifa6g01583 305 SMART ubq_7 77 148 IPR000626 GO:0005515
Vifa6g01583 305 SMART ubq_7 153 224 IPR000626 GO:0005515
Vifa6g01583 305 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Vifa6g01583 305 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Vifa6g01583 305 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Vifa6g01583 305 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Vifa6g01583 305 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vifa6g01583 305 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Vifa6g01583 305 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Vifa6g01583 305 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Vifa6g01583 305 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vifa6g01583 305 CDD Ubl_ubiquitin 1 76 - -
Vifa6g01583 305 FunFam Polyubiquitin 3 1 76 - -
Vifa6g01583 305 CDD Ubl_ubiquitin 153 228 - -
Vifa6g01583 305 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Vifa6g01583 305 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vifa6g01583 305 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Vifa6g01583 305 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Vifa6g01583 305 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vifa6g01583 305 FunFam Polyubiquitin 3 153 228 - -
Vifa6g01583 305 PRINTS Ubiquitin signature 129 150 IPR019956 -
Vifa6g01583 305 PRINTS Ubiquitin signature 87 107 IPR019956 -
Vifa6g01583 305 PRINTS Ubiquitin signature 108 128 IPR019956 -
Vifa6g01583 305 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Vifa6g01583 305 CDD Ubl_ubiquitin 77 152 - -
Vifa6g01583 305 PANTHER UBIQUITIN 77 154 - -
Vifa6g01583 305 Gene3D - 77 152 - -
Vifa6g01583 305 Gene3D - 1 76 - -
Vifa6g01583 305 Gene3D - 229 305 - -
Vifa6g01583 305 Gene3D - 153 228 - -
Vifa6g01583 305 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Vifa6g01583 305 FunFam Polyubiquitin 3 229 304 - -
Vifa6g01583 305 CDD Ubl_ubiquitin 229 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01583 Vifa-Chr6 580475304 580476221 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01583 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 4.89e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01583 K08770 - twl:119998207 590.112