LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g01582	ATGAGATGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAAGACACCCGCAACAATTTCACCGATCACCTCTTTGGCGCTCTTCATAATAAAGGCATTGTTTCCTTCAGAGATGACACTAAGCTCAAGAAAGGGGAACATATATCATCTGAACTTCTACAAGCTATTCAAGGATCCCGTATTTTGATTGTTATCTTCTCAACAAACTATGCTTCTTCCACATGGTGCTTGCAAGAACTCGCAAAAATTGCTGATTGCATTCTTCAAGTATCAGGACAATCTGTTCTACCTATTTTCTACGATGTTAGTCCATCTCATGTAGGGAAGCAAAGCGGAGATTACGAAAAAGCATTTCGGGAGCATGAAGTAAGATTCAAAGAAAATTTAGAGCAAGTGCAAAGATGGAGGAGAGCCCTCACACACGTATCCAAAATCTCTGGTTGGGATGTAAGGGATAAGCCACATTATGCAGAGATTGGAAAAATTATTAAAGAGGTAACATGCTTATTGGGAAACAAATCTTCAATTTTACCTGCCGATATAGTTGGGATGAACTCACCAGTGGAAGAACTAGAAAATCTTCTGGTTTTGGACTCAGATGATGATGTTCGAGTTGTAGGGATTTGTGGAATGGGTGGAATAGGGAAGACAACTCTTGCTACTGCCTTGTATGCTAGAATCTCCAATCAATTTGATGCTTGCTGCTTTATTCATGATGTAAGTAAAATTTATGGAGACCATGGGCCAATTGGAATACAAAAACAACTTCTTTGTCAAACTCTAAATGAAGAAAATCTTCAGATATCCAATCTTCCTATGGCATCTAATTTGATTCGAACTAGGCTATGTCAAATAAAATCCCTTGTTGTTCTTGATAATGTTGATGAAGTTGAGCAACTGGATAAATTGAACATGAAAAGAGAATGGCTAGGCACAGGGAGTAGAATAATCATTATTTCTAGAAATGGGCATATCTTGAGAGAGCATGGAGTAGATGAAGTATACAGAGTTCGACTCTTGGATCGTAAATATGCCCTTCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCATGAGCGGTTACATATACTTGACATATGATGTGCTAAACTATGTCCGTGGCCTTCCACTAGCAATTAAAGTGTTGGGCTCATTTCTATATGGCCGAGATGTCTCTGAGTGGAGAAGTGCATTGTCAAGATTAAGAGATAATCCAAGGATAGATATTATGAATGTACTCCGAATGACTTTTGATGGATTAGAGGATACAGAAAAGGATATATTTCTAGATATTGCTTGTTTCTTTTATGAAAAAGATGAAACAATCGTGAAGAGAGTTTTAGATTTTCGTGGTTTTCATCCTGGAATTGGTTTAAGAGTTCTCATTGATAAATCATTCATAACCTGTGAAAAGCAGAAAATTTGTATGCATGATTTGTTCAGAGAACTGGGAAAGAGTATTGTTAGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAACAGGTTGTGGGAATACAAGGATGTCCACAGTGTTATCTCAGAAAACATGGCAACAAAAAACCTTGAAGCCATAGTGTTGCAGCGTTGTCCAGAAAACGATGGAGTAATACCAGAGATGACAACATTGAGGGCTGAAGGTTTAGAACAAATGAGACGCCTTAAATTGCTCATGCTATGGAATTTGAATTTCTCAGGAAGTCTCAATTTTCTTTCAAGTGAATTGGGGTATCTTTATTGGGGTAAATACCCTTTCACTTGTTTGCCATCAAGTTTTCAGCCAGATAAACTTGTTGAACTGATCCTACCTCGTAGCAACATCGCGCAACTATGGGAGGGCACAAAGGTTCTACCTAATTTGACACATATTGATCTCTCTCACTCGAAAAATCTTATTAAGATGCCAAATTTTAAGGAGATTCCAAATCTCGAGAGCCTAGCTCTTGAAGGATGTATAAAACTAGTGAAGATTGATCCATCCATTGGTACCTTAAGAAGGCTTTCCAGATTAGATTTGAAAAATTGTACAAATCTGTTTAATTGA	2046	0.3754	MRWKYDVFVSFRGEDTRNNFTDHLFGALHNKGIVSFRDDTKLKKGEHISSELLQAIQGSRILIVIFSTNYASSTWCLQELAKIADCILQVSGQSVLPIFYDVSPSHVGKQSGDYEKAFREHEVRFKENLEQVQRWRRALTHVSKISGWDVRDKPHYAEIGKIIKEVTCLLGNKSSILPADIVGMNSPVEELENLLVLDSDDDVRVVGICGMGGIGKTTLATALYARISNQFDACCFIHDVSKIYGDHGPIGIQKQLLCQTLNEENLQISNLPMASNLIRTRLCQIKSLVVLDNVDEVEQLDKLNMKREWLGTGSRIIIISRNGHILREHGVDEVYRVRLLDRKYALQLFCRKAFKSDDIMSGYIYLTYDVLNYVRGLPLAIKVLGSFLYGRDVSEWRSALSRLRDNPRIDIMNVLRMTFDGLEDTEKDIFLDIACFFYEKDETIVKRVLDFRGFHPGIGLRVLIDKSFITCEKQKICMHDLFRELGKSIVREKSPKEPRKWNRLWEYKDVHSVISENMATKNLEAIVLQRCPENDGVIPEMTTLRAEGLEQMRRLKLLMLWNLNFSGSLNFLSSELGYLYWGKYPFTCLPSSFQPDKLVELILPRSNIAQLWEGTKVLPNLTHIDLSHSKNLIKMPNFKEIPNLESLALEGCIKLVKIDPSIGTLRRLSRLDLKNCTNLFN	681

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g01582	681	ProSiteProfiles	TIR domain profile.	3	170	IPR000157	GO:0007165
	Vifa6g01582	681	PRINTS	Disease resistance protein signature	281	295	-	-
	Vifa6g01582	681	PRINTS	Disease resistance protein signature	663	679	-	-
	Vifa6g01582	681	PRINTS	Disease resistance protein signature	205	220	-	-
	Vifa6g01582	681	PRINTS	Disease resistance protein signature	374	388	-	-
	Vifa6g01582	681	SUPERFAMILY	Toll/Interleukin receptor TIR domain	2	148	IPR035897	-
	Vifa6g01582	681	SMART	till_3	4	145	IPR000157	GO:0007165
	Vifa6g01582	681	SUPERFAMILY	"Winged helix" DNA-binding domain	410	514	IPR036390	-
	Vifa6g01582	681	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	5	677	IPR044974	GO:0006952
	Vifa6g01582	681	SUPERFAMILY	L domain-like	534	679	-	-
	Vifa6g01582	681	Gene3D	Ribonuclease Inhibitor	507	681	IPR032675	-
	Vifa6g01582	681	Pfam	NB-ARC domain	187	407	IPR002182	GO:0043531
	Vifa6g01582	681	Gene3D	-	340	423	IPR042197	-
	Vifa6g01582	681	Gene3D	-	173	334	IPR027417	-
	Vifa6g01582	681	Gene3D	-	1	172	IPR035897	-
	Vifa6g01582	681	Pfam	TIR domain	4	148	IPR000157	GO:0007165
	Vifa6g01582	681	FunFam	Disease resistance protein (TIR-NBS-LRR class)	1	172	-	-
	Vifa6g01582	681	Pfam	Leucine Rich Repeat	597	616	IPR011713	-
	Vifa6g01582	681	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	174	433	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g01582	Vifa-Chr6	580453120	580456202	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g01582	5	681	WRKY Transcription Factor Family	AT4G12020	29.772	1.18e-78	272

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g01582	-		-	psat:127106907	1087.02