LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g01581	ATGAGATGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAAGACACCCGCAACAATTTCACCGATCACCTCTTTGGCGCTCTTCATAATAAAGGCATTGTTTCCTTCAGAGATGACACTAAGCTCAAGAAAGGGGAACATATATCATCTGAACTTCTACAAGCTATTCAAGGATCCCGTATTTTGATTGTTATCTTCTCAACAAACTATGCTTCTTCCACATGGTGCTTGCAAGAACTCGCAAAAATTGCTGATTGCATTCTTCAAGTATCAGGACAATCTGTTCTACCTATTTTCTACGATGTTAGTCCATCTCATGTAGGGAAGCAAAGCGGAGATTACGAAAAAGCATTTCGGGAGCATGAAGTAAGATTCAAAGAAAATTTAGAGCAAGTGCAAAGATGGAGGAGAGCCCTCACACACGTATCCAAAATCTCTGGTTGGGATGTAAGGGATAAGCCACATTATGCAGAGATTGGAAAAATTATTAAAGAGGTAACATGCTTATTGGGAAACAAATCTTCAATTTTACCTGCCGATATAGTTGGGATGAACTCACCAGTGGAAGAACTAGAAAATCTTCTGGTTTTGGACTCAGATGATGATGTTCGAGTTGTAGGGATTTGTGGAATGGGTGGAATAGGGAAGACAACTCTTGCTACTGCCTTGTATGCTAGAATCTCCAATCAATTTGATGCTTGCTGCTTTATTCATGATGTAAGTAAAATTTATGGAGACCATGGGCCAATTGGAATACAAAAACAACTTCTTTGTCAAACTCTAAATGAAGAAAATCTTCAGATATCCAATCTTCCTATGGCATCTAATTTGATTCGAACTAGGCTATGTCAAATAAAATCCCTTGTTGTTCTTGATAATGTTGATGAAGTTGAGCAACTGGATAAATTGAACATGAAAAGAGAATGGCTAGGCACAGGGAGTAGAATAATCATTATTTCTAGAAATGGGCATATCTTGAGAGAGCATGGAGTAGATGAAGTATACAGAGTTCGACTCTTGGATCGTAAATATGCCCTTCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCATGAGCGGTTACATATACTTGACATATGATGTGCTAAACTATGTCCGTGGCCTTCCACTAGCAATTAAAGTGTTGGGCTCATTTCTATATGGCCGAGATGTCTCTGAGTGGAGAAGTGCATTGTCAAGATTAAGAGATAATCCAAGGATAGATATTATGAATGTACTCCGAATGACTTTTGATGGATTAGAGGATACAGAAAAGGATATATTTCTAGATATTGCTTGTTTCTTTTATGAAAAAGATGAAACAATCGTGAAGAGAGTTTTAGATTTTCGTGGTTTTCATCCTGGAATTGGTTTAAGAGTTCTCATTGATAAATCATTCATAACCTGTGAAAAGCAGAAAATTTGTATGCATGATTTGTTCAGAGAACTGGGAAAGAGTATTGTTAGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAACAGGTTGTGGGAATACAAGGATGTCCACAGTGTTATCTCAGAAAACATGGCAACAAAAAACCTTGAAGCCATAGTGTTGCAGCGTTGTCCAGAAAACGATGGAGTAATACCAGAGATGACAACATTGAGGGCTGAAGGTTTAGAACAAATGAGACGCCTTAAATTGCTCATGCTATGGAATTTGAATTTCTCAGGAAGTCTCAATTTTCTTTCAAGTGAATTGGGGTATCTTTATTGGGGTAAATACCCTTTCACTTGTTTGCCATCAAGTTTTCAGCCAGATAAACTTGTTGAACTGATCCTACCTCGTAGCAACATCGCGCAACTATGGGAGGGCACAAAGGTTCTACCTAATTTGACACATATTGATCTCTCTCACTCGAAAAATCTTATTAAGATGCCAAATTTTAAGGAGATTCCAAATCTCGAGAGCCTAGCTCTTGAAGGATGTATAAAACTAGTGAAGATTGATCCATCCATTGAAATTCTATATTTAGGGGGGAACAATTTTGTGATACTACCTTCTAACATCAAGGAACTTTCCAAACTTAGAAGATTAAACTTGCAACACTGTAAGCAGCTGAAATATTTGCCTGAGCTCCCATCAAATAATGTCTTGCCAACAAGAAGAACAACATATTTAAGAACTGTCGCTGAATTTAATATTTTTGACTGCCCCAGTTTAATTGATGTGGAATGTTGTTATATAATGGCTTTTTCTTGGATGATACAATTTCTTCAGATGCACATGCAATCCGAGATCCCAATAGAACAGATTACAATTGTTATTCCCAAAACTGAAATTCCAATGTGGCTCGACAAACAAAATGTAGGTAGTTCAATAAGCATGGATCCATCACCCATTATGGATGACAAGAATTGGATAGGTGTTGTTTGCTGCTTAACATTTGTAGCACATGATAATCCCACTACTTTAAGTAAAGAACAGCCTCGTATTTACTTTGGTTTTCAAAGTAATCAGCATGGTCGTGGGAACTATTCAATTATTCCCATACGTCTTGAAAAAGATCTGGTCACAGTTGATTTAAATCACTTGTTGCTAATTTTTTTCAGCAGGGAAGAATTTATTGGTTATTATATGACCTATCTAACAGAGGTATTGCATGATATTAGTTGTATTGAATTGAGAGCTATAGTTAGGCAGCCCCTTGGTTTGCACTTGGAGGTAAAAAATTGTGGTTATCGTTGGATATTTAAGGAAGATCTGGAACAATTAAACTCACAAATGTACAATGGAAATTCGTCAATTCAGCCATATTATTGA	2790	0.3692	MRWKYDVFVSFRGEDTRNNFTDHLFGALHNKGIVSFRDDTKLKKGEHISSELLQAIQGSRILIVIFSTNYASSTWCLQELAKIADCILQVSGQSVLPIFYDVSPSHVGKQSGDYEKAFREHEVRFKENLEQVQRWRRALTHVSKISGWDVRDKPHYAEIGKIIKEVTCLLGNKSSILPADIVGMNSPVEELENLLVLDSDDDVRVVGICGMGGIGKTTLATALYARISNQFDACCFIHDVSKIYGDHGPIGIQKQLLCQTLNEENLQISNLPMASNLIRTRLCQIKSLVVLDNVDEVEQLDKLNMKREWLGTGSRIIIISRNGHILREHGVDEVYRVRLLDRKYALQLFCRKAFKSDDIMSGYIYLTYDVLNYVRGLPLAIKVLGSFLYGRDVSEWRSALSRLRDNPRIDIMNVLRMTFDGLEDTEKDIFLDIACFFYEKDETIVKRVLDFRGFHPGIGLRVLIDKSFITCEKQKICMHDLFRELGKSIVREKSPKEPRKWNRLWEYKDVHSVISENMATKNLEAIVLQRCPENDGVIPEMTTLRAEGLEQMRRLKLLMLWNLNFSGSLNFLSSELGYLYWGKYPFTCLPSSFQPDKLVELILPRSNIAQLWEGTKVLPNLTHIDLSHSKNLIKMPNFKEIPNLESLALEGCIKLVKIDPSIEILYLGGNNFVILPSNIKELSKLRRLNLQHCKQLKYLPELPSNNVLPTRRTTYLRTVAEFNIFDCPSLIDVECCYIMAFSWMIQFLQMHMQSEIPIEQITIVIPKTEIPMWLDKQNVGSSISMDPSPIMDDKNWIGVVCCLTFVAHDNPTTLSKEQPRIYFGFQSNQHGRGNYSIIPIRLEKDLVTVDLNHLLLIFFSREEFIGYYMTYLTEVLHDISCIELRAIVRQPLGLHLEVKNCGYRWIFKEDLEQLNSQMYNGNSSIQPYY	929

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g01581	929	ProSiteProfiles	TIR domain profile.	3	170	IPR000157	GO:0007165
	Vifa6g01581	929	SMART	till_3	4	145	IPR000157	GO:0007165
	Vifa6g01581	929	Pfam	TIR domain	4	148	IPR000157	GO:0007165
	Vifa6g01581	929	Gene3D	-	172	333	IPR027417	-
	Vifa6g01581	929	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	174	433	IPR027417	-
	Vifa6g01581	929	PRINTS	Disease resistance protein signature	374	388	-	-
	Vifa6g01581	929	PRINTS	Disease resistance protein signature	680	696	-	-
	Vifa6g01581	929	PRINTS	Disease resistance protein signature	281	295	-	-
	Vifa6g01581	929	PRINTS	Disease resistance protein signature	205	220	-	-
	Vifa6g01581	929	Gene3D	Ribonuclease Inhibitor	510	770	IPR032675	-
	Vifa6g01581	929	SUPERFAMILY	"Winged helix" DNA-binding domain	410	514	IPR036390	-
	Vifa6g01581	929	SUPERFAMILY	L domain-like	534	702	-	-
	Vifa6g01581	929	Gene3D	-	340	423	IPR042197	-
	Vifa6g01581	929	FunFam	Disease resistance protein (TIR-NBS-LRR class)	1	172	-	-
	Vifa6g01581	929	Pfam	NB-ARC domain	187	407	IPR002182	GO:0043531
	Vifa6g01581	929	Pfam	Leucine Rich Repeat	597	616	IPR011713	-
	Vifa6g01581	929	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	5	731	IPR044974	GO:0006952
	Vifa6g01581	929	Gene3D	-	1	171	IPR035897	-
	Vifa6g01581	929	SUPERFAMILY	Toll/Interleukin receptor TIR domain	2	148	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g01581	Vifa-Chr6	580452438	580456202	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g01581	5	700	WRKY Transcription Factor Family	AT4G12020	28.405	2.30e-77	275

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g01581	-		-	psat:127106907	1071.23