Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01572 ATGAAGAAGAATTTGAATCTGGAACTTCGTCTTTTCACTACTTCCAATCTTCCTATCTCAATGAAAGAAGAAGCACAAGATCAACAGCAACATCGACCGTTTACCATTGTCTATGATGGCAAAGTTTGTGTTTCTGATGCTACTGAGAATCAGGCCAGGTCTATTCTAATGCTTGCAAATAAAGAAATGGAGGAAAGAGTGAGGACACCAAATGGATCATCATCAGAGCCATCTTCACCAGCAGTATTTACTAACTTGTATAGTCCTGGAACTTCTCATTCCATGAAAAAATCATTGCAGAGGTTTCTCGAAAAAAGGAAGAATCGGATCCAAGAAGCATCACCTTACCATTTTAATGAGCAGAATTGA 369 0.3848 MKKNLNLELRLFTTSNLPISMKEEAQDQQQHRPFTIVYDGKVCVSDATENQARSILMLANKEMEERVRTPNGSSSEPSSPAVFTNLYSPGTSHSMKKSLQRFLEKRKNRIQEASPYHFNEQN 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01572 122 MobiDBLite consensus disorder prediction 63 100 - -
Vifa6g01572 122 MobiDBLite consensus disorder prediction 70 97 - -
Vifa6g01572 122 Pfam tify domain 29 60 IPR010399 -
Vifa6g01572 122 ProSiteProfiles Tify domain profile. 27 61 IPR010399 -
Vifa6g01572 122 Pfam Jas motif 96 116 IPR018467 -
Vifa6g01572 122 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 117 IPR040390 -
Vifa6g01572 122 SMART tify_2 27 61 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01572 Vifa-Chr6 568141665 568142673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01572 1 117 Tify Gene Family AT1G30135 39.844 1.08e-20 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa6g01572 tify 9.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01572 - - gmx:100500349 138.658