Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01569 ATGAAGCTTTCTTCAGCTGGTTTTAGTCCTCCACCTCAAGAAGGAGAGAAACGGGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTGCCAGCTGATGGAAGCCGTGTGGTATACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCTACCAACAGAGAAGTTGATACATATATCCCCAATCCAAGCTTACCTCCCCAGCTTATTTGTCAACTTCATAATCTGACAATGCATGCAGATACAGAGACAGATGAAGTGTATGCACAGATGACCTTGCAACCTCTAAATCCTGATGAACAAAAAGAGGCATATCATCCTGCAGAGTTGGGAACTGCAAATAAACAGCCAACAAACTATTTCTGCAAAATTTTGACTGCCAGTGATACAAGCACTCATGGGGGTTTCTCTGTTCCTCGCCGCGCAGCTGAAAAAGTTTTCCCTCCATTGGACTTTTCCCAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGACTGGAAATTCAAACATATCTTCCGCGGCCAGCCCAAAAGGCATTTGCTTACAACTGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGAAAAAAATCAGTTGCTTCTAGGCATTCGGCGTGCCAATCGCCCACAACATATGATGCCTTCATCAGTGTTGTCAAGTGACAGCATGCACTTGGGGCTGCTTGCTGCTGCAGCTCACGCCGCTGCAACGAACAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCAGAATTTGTCATTCCCCTAGCGAAGTATGTTAAAGCTGTATATCACACTCGAGTTTCAGTTGGTATGCGCTTCAGAATGCTTTTTGAAACAGAGGAGTCTAGTGTTCGGCGATACATGGGAACAATAACTGGCATCAGTGACCTGGATTCTGTCCGGTGGCCGAGTTCACATTGGCGCTCAGTAAAGGTCGGTTGGGATGAATCCACAGCAGGTGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTTAAAAGACCATGGCCTCCTGGACTTCCTTCATTCAACGGCTTGAAGGATGATGATTTTGGCATGAATTCTCCCCTATTATGGCTTCGAGACTCTGATAGAGGGCTTCAAACTCTTAATTTTCAAGGGATGGGTGTTAATCCTTGGATGCAGGCGAGGATCGATCCGTCTATGATGAATTTGCAACCAGATATGTACCATGCTATGGCAGCTGCTGCACTTCAGGATATGAGGACTTTAGATCCTTCTAAACAGCATCCCGCTTCCTTACTTCAATTTCAGCAGCCACAGAATTTTCCCAATGGTACTGCCGCTTTAATTCAGAGCCAGATGATGCAGCAGCCTCAACCTCAGCACGCTTTTCCAAAAAATCAAGAACATCAGCATCCATCTCAATCTCAGGCTCAAACCCAGCGGTTCCAGCAGCTTCTTCAGCATCAGCACTCATTCACTAATCAAAATTATCATCCACAGCAGCAACATCAACAGCAGCATCAACAACAGCAGCAGCAGCAGCAGCATCAACTTCAGCAACAACATCAACATCAGCAGCAACAACATCAACAACTGCAACAGCAGCAGCAACAACATCAGCAGCAACAACATCAACAAGTGCAACAGCAGCAGCAACAACAATCAAAACAGCAACAAGTTGTAGATCATCAGCAGATTTCAAATGCCGTCTCTACAATGTCTCAGTTTGTTTCGGCACCTCAATCTCAATCGACGCAGCCCATGCAAGCTATCTCTTCAATTGGCAATCAGCAACATTTTTCTGACTCAAATGGGAACCCTGCAACTACTGCCATTGTTTCTCCATTACACAATATGTTAGGTTCATTTTCCAATGACGAAACATCTCACCTTCTCAACTTTCCTAAACCAAACTCTTGGGTTCCTGTTCAATCTTCAACAGCATGGCCCTCCAAGCGCGTTGCCTTGGATCCTCTCGTTTCTTCTGGAACATCTCATTATGTTCTGCCTCAAATGGAGCAGCTTGGGCAGTCACAAACTACCATGTCTCAAAATGCTATTACCTTGCCACCATTTCCTGGTAGGGAGTGTGCTATCGAAGGGAACACTGATTCACAAAACCATCTTTTGTTCGGTTTTAACATAGAGCCCTCATCACATTTAGTGTATAACGAGATGTCAAACCTTAAGGGTGTCAATAGCAACTGTGACTCATCAACTGTGCCTTTTCAATCTTCTACCTACCTGAATACCACAGGTGCTGATTCTTCATTGAATAATGGAATGACACACGGTGTTGGCGAGTCGGGATTCCTACAAACTTCTGAAAACGGAGGTCAAGGAAACTCACCAAACAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAATTCTCTAACTACCCCGAGCTACGCAGCGAGCTTGCTCGTATGTTTGGGCTTGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAAGAGAATGACGTTCTTCTCCTCGGTGATGGTCCGTGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGAAACAATGGACTAGAGCTTCTAAACTCAGCTCCAACTCAGAGGCTCTCTAATGGCATCTGTGATGACTACACCGGCCGCGAGGACCCGAGAACTTTAAGCACAGGGTTAACATCTGTGGGGTCTTTAGACTATTGA 2847 0.4524 MKLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPDEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPSSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGLKDDDFGMNSPLLWLRDSDRGLQTLNFQGMGVNPWMQARIDPSMMNLQPDMYHAMAAAALQDMRTLDPSKQHPASLLQFQQPQNFPNGTAALIQSQMMQQPQPQHAFPKNQEHQHPSQSQAQTQRFQQLLQHQHSFTNQNYHPQQQHQQQHQQQQQQQQHQLQQQHQHQQQQHQQLQQQQQQHQQQQHQQVQQQQQQQSKQQQVVDHQQISNAVSTMSQFVSAPQSQSTQPMQAISSIGNQQHFSDSNGNPATTAIVSPLHNMLGSFSNDETSHLLNFPKPNSWVPVQSSTAWPSKRVALDPLVSSGTSHYVLPQMEQLGQSQTTMSQNAITLPPFPGRECAIEGNTDSQNHLLFGFNIEPSSHLVYNEMSNLKGVNSNCDSSTVPFQSSTYLNTTGADSSLNNGMTHGVGESGFLQTSENGGQGNSPNKTFVKVYKSGSFGRSLDITKFSNYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSAPTQRLSNGICDDYTGREDPRTLSTGLTSVGSLDY 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01569 948 Gene3D - 124 227 IPR015300 -
Vifa6g01569 948 FunFam Auxin response factor 124 228 - -
Vifa6g01569 948 Gene3D - 290 362 - -
Vifa6g01569 948 CDD B3_DNA 125 226 IPR003340 GO:0003677
Vifa6g01569 948 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
Vifa6g01569 948 MobiDBLite consensus disorder prediction 481 511 - -
Vifa6g01569 948 Pfam AUX/IAA family 808 900 IPR033389 -
Vifa6g01569 948 SUPERFAMILY CAD & PB1 domains 811 890 - -
Vifa6g01569 948 Coils Coil 537 581 - -
Vifa6g01569 948 FunFam Auxin response factor 810 904 - -
Vifa6g01569 948 SMART B3_2 126 228 IPR003340 GO:0003677
Vifa6g01569 948 Gene3D - 811 904 - -
Vifa6g01569 948 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa6g01569 948 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 597 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa6g01569 948 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vifa6g01569 948 ProSiteProfiles PB1 domain profile. 815 899 IPR000270 GO:0005515
Vifa6g01569 948 FunFam Auxin response factor 290 362 - -
Vifa6g01569 948 MobiDBLite consensus disorder prediction 525 561 - -
Vifa6g01569 948 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01569 Vifa-Chr6 564527303 564532788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01569 1 482 B3 DNA Binding Superfamily AT1G30330 83.402 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa6g01569 AUX_IAA 1.1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01569 - - nnu:104610223 1274.23