Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01568 ATGAAGCTTTCTTCAGCTGGTTTTAGTCCTCCACCTCAAGAAGGAGAGAAACGGGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTGCCAGCTGATGGAAGCCGTGTGGTATACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCTACCAACAGAGAAGTTGATACATATATCCCCAATCCAAGCTTACCTCCCCAGCTTATTTGTCAACTTCATAATCTGACAATGCATGCAGATACAGAGACAGATGAAGTGTATGCACAGATGACCTTGCAACCTCTAAATCCTGATGAACAAAAAGAGGCATATCATCCTGCAGAGTTGGGAACTGCAAATAAACAGCCAACAAACTATTTCTGCAAAATTTTGACTGCCAGTGATACAAGCACTCATGGGGGTTTCTCTGTTCCTCGCCGCGCAGCTGAAAAAGTTTTCCCTCCATTGGACTTTTCCCAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGACTGGAAATTCAAACATATCTTCCGCGGCCAGCCCAAAAGGCATTTGCTTACAACTGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGAAAAAAATCAGTTGCTTCTAGGCATTCGGCGTGCCAATCGCCCACAACATATGATGCCTTCATCAGTGTTGTCAAGTGACAGCATGCACTTGGGGCTGCTTGCTGCTGCAGCTCACGCCGCTGCAACGAACAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCAGAATTTGTCATTCCCCTAGCGAAGTATGTTAAAGCTGTATATCACACTCGAGTTTCAGTTGGTATGCGCTTCAGAATGCTTTTTGAAACAGAGGAGTCTAGTGTTCGGCGATACATGGGAACAATAACTGGCATCAGTGACCTGGATTCTGTCCGGTGGCCGAGTTCACATTGGCGCTCAGTAAAGGTCGGTTGGGATGAATCCACAGCAGGTGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTTAAAAGACCATGGCCTCCTGGACTTCCTTCATTCAACGCAGGCTTGAAGGATGATGATTTTGGCATGAATTCTCCCCTATTATGGCTTCGAGACTCTGATAGAGGGCTTCAAACTCTTAATTTTCAAGGGATGGGTGTTAATCCTTGGATGCAGGCGAGGATCGATCCGTCTATGATGAATTTGCAACCAGATATGTACCATGCTATGGCAGCTGCTGCACTTCAGGATATGAGGACTTTAGATCCTTCTAAACAGCATCCCGCTTCCTTACTTCAATTTCAGCAGCCACAGAATTTTCCCAATGGTACTGCCGCTTTAATTCAGAGCCAGATGATGCAGCAGCCTCAACCTCAGCACGCTTTTCCAAAAAATCAAGAACATCAGCATCCATCTCAATCTCAGGCTCAAACCCAGCGGTTCCAGCAGCTTCTTCAGCATCAGCACTCATTCACTAATCAAAATTATCATCCACAGCAGCAACATCAACAGCAGCATCAACAACAGCAGCAGCAGCAGCAGCATCAACTTCAGCAACAACATCAACATCAGCAGCAACAACATCAACAACTGCAACAGCAGCAGCAACAACATCAGCAGCAACAACATCAACAAGTGCAACAGCAGCAGCAACAACAATCAAAACAGCAACAAGTTGTAGATCATCAGCAGATTTCAAATGCCGTCTCTACAATGTCTCAGTTTGTTTCGGCACCTCAATCTCAATCGACGCAGCCCATGCAAGCTATCTCTTCAATTGGCAATCAGCAACATTTTTCTGACTCAAATGGGAACCCTGCAACTACTGCCATTGTTTCTCCATTACACAATATGTTAGGTTCATTTTCCAATGACGAAACATCTCACCTTCTCAACTTTCCTAAACCAAACTCTTGGGTTCCTGTTCAATCTTCAACAGCATGGCCCTCCAAGCGCGTTGCCTTGGATCCTCTCGTTTCTTCTGGAACATCTCATTATGTTCTGCCTCAAATGGAGCAGCTTGGGCAGTCACAAACTACCATGTCTCAAAATGCTATTACCTTGCCACCATTTCCTGGTAGGGAGTGTGCTATCGAAGGGAACACTGATTCACAAAACCATCTTTTGTTCGGTTTTAACATAGAGCCCTCATCACATTTAGTGTATAACGAGATGTCAAACCTTAAGGGTGTCAATAGCAACTGTGACTCATCAACTGTGCCTTTTCAATCTTCTACCTACCTGAATACCACAGGTGCTGATTCTTCATTGAATAATGGAATGACACACGGTGTTGGCGAGTCGGGATTCCTACAAACTTCTGAAAACGGAGGTCAAGGAAACTCACCAAACAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAATTCTCTAACTACCCCGAGCTACGCAGCGAGCTTGCTCGTATGTTTGGGCTTGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAAGAGAATGACGTTCTTCTCCTCGGTGATGGTCCGTGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGAAACAATGGACTAGAGCTTCTAAACTCAGCTCCAACTCAGAGGCTCTCTAATGGCATCTGTGATGACTACACCGGCCGCGAGGACCCGAGAACTTTAAGCACAGGGTTAACATCTGTGGGGTCTTTAGACTATTGA 2850 0.4526 MKLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPDEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPSSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNAGLKDDDFGMNSPLLWLRDSDRGLQTLNFQGMGVNPWMQARIDPSMMNLQPDMYHAMAAAALQDMRTLDPSKQHPASLLQFQQPQNFPNGTAALIQSQMMQQPQPQHAFPKNQEHQHPSQSQAQTQRFQQLLQHQHSFTNQNYHPQQQHQQQHQQQQQQQQHQLQQQHQHQQQQHQQLQQQQQQHQQQQHQQVQQQQQQQSKQQQVVDHQQISNAVSTMSQFVSAPQSQSTQPMQAISSIGNQQHFSDSNGNPATTAIVSPLHNMLGSFSNDETSHLLNFPKPNSWVPVQSSTAWPSKRVALDPLVSSGTSHYVLPQMEQLGQSQTTMSQNAITLPPFPGRECAIEGNTDSQNHLLFGFNIEPSSHLVYNEMSNLKGVNSNCDSSTVPFQSSTYLNTTGADSSLNNGMTHGVGESGFLQTSENGGQGNSPNKTFVKVYKSGSFGRSLDITKFSNYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSAPTQRLSNGICDDYTGREDPRTLSTGLTSVGSLDY 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01568 949 Gene3D - 124 227 IPR015300 -
Vifa6g01568 949 MobiDBLite consensus disorder prediction 482 512 - -
Vifa6g01568 949 ProSiteProfiles PB1 domain profile. 816 900 IPR000270 GO:0005515
Vifa6g01568 949 FunFam Auxin response factor 124 228 - -
Vifa6g01568 949 SUPERFAMILY CAD & PB1 domains 812 891 - -
Vifa6g01568 949 Gene3D - 290 362 - -
Vifa6g01568 949 CDD B3_DNA 125 226 IPR003340 GO:0003677
Vifa6g01568 949 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
Vifa6g01568 949 Pfam AUX/IAA family 809 901 IPR033389 -
Vifa6g01568 949 FunFam Auxin response factor 811 905 - -
Vifa6g01568 949 MobiDBLite consensus disorder prediction 526 562 - -
Vifa6g01568 949 SMART B3_2 126 228 IPR003340 GO:0003677
Vifa6g01568 949 MobiDBLite consensus disorder prediction 795 814 - -
Vifa6g01568 949 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Vifa6g01568 949 Gene3D - 812 905 - -
Vifa6g01568 949 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa6g01568 949 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vifa6g01568 949 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 905 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa6g01568 949 FunFam Auxin response factor 290 362 - -
Vifa6g01568 949 Coils Coil 538 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01568 Vifa-Chr6 564527303 564532788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01568 1 483 B3 DNA Binding Superfamily AT1G30330 83.231 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa6g01568 AUX_IAA 1.1e-06 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01568 6 564527303 564532788 Vifa6g01568 6 564527303 564532788 ECH