Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01567 ATGGGTCGTCGCAAAATTGAGATTGAGATGGTGAAAGACCCCAATACAAGACAAGTCACTTTCTCGAAACGTCGAACAGGCTTATTCAAAAAAGCAAATGAATTATCAATTTTGTGTGGAGCTGAAGTGGCGATTGTTGTGTTTTCTCCAGGTAACAAACCATATTCTTTTGGTCATCCAGGAGTTGATGTTGTTGCAGCCAACTATCTCCAACAAGAGAATATAAATATACCAAATGATTCTCAAAGAAACGCCTCTTTTGATTCTCCCAATATGGAAAATTTGAATCAAGAACTTAATGAGGTATTGGCCCAAATTCGGGAAAGTGAAAAACAAATTGAAAAATATGATGAGATTTTGAAGAAAAATGAGATTTTGAAAAAACTCTTTGAACTTGAAGGATTGAAAGATTCATATAAACAATTTCAAGATTTGGTGAAATTACGTCTTAGTGATCTTAAAATATCAGAATATTTGATGCTTCTTGCTAAAGATCCCGTGGTAGGAGTAAAGGCGAAACCTACAAGAAAGAAAAGAAGAAAAAATTAA 549 0.3388 MGRRKIEIEMVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDVVAANYLQQENINIPNDSQRNASFDSPNMENLNQELNEVLAQIRESEKQIEKYDEILKKNEILKKLFELEGLKDSYKQFQDLVKLRLSDLKISEYLMLLAKDPVVGVKAKPTRKKRRKN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01567 182 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Vifa6g01567 182 Coils Coil 92 126 - -
Vifa6g01567 182 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa6g01567 182 CDD MADS 2 60 - -
Vifa6g01567 182 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa6g01567 182 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa6g01567 182 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa6g01567 182 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Vifa6g01567 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Vifa6g01567 182 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa6g01567 182 PANTHER MADS BOX PROTEIN 3 146 - -
Vifa6g01567 182 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01567 Vifa-Chr6 563605534 563606082 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01567 1 164 Type I MADS-box Gene Family AT2G34440 43.023 7.13e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa6g01567 SRF-TF 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01567 - - mtr:11439559 239.965