Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01564 ATGACAGGAGACGCGAGGCTAATCGAAGAAGGCTCTGGTGAGATTGAGACGGCTGCAGAGTCTGGTTACCCGGCGGCACAATCAGTGTTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAGAGGAGTAAACATAAAGCATTTGTTTATCATCATTTTGCTTCAGATGGTGGAAATATGCAATCCAAAATGGCTCTTGCTTATACCTACACTCGTCAAGATATGTTTGATAAATCGGTTAAGCTTTATGCTGAATTAGCAGAAGTGGCTGTCAATGGTTTTCTCATTTCCAAAGATTCTCCCGTCATTGAACCTATTAGGCTACACAATGGAGCTGAAGAGAACAAAGAGGCACTTAGAAAATCTAAAGGGGAAGAGGATGAGGATTTTCAGATTCTCGAGTATCAGGCACAGAAAGGGAATGCTGCTGCTATGTACAAAGTGGGACTCTTTTACTACTTTGGGCTACGTGGATTGAGGCGTGACCATTCTAAGGCACTTTCGTGGTTCTTGAAGGCAGTGGAGAAGGGAGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATATATGCCAGGGGAGCCGGCTATGGAGTCGACAGCAAAAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTTTCTCAAGGGGATTGGAGTGAAAAGAGATGTGCGGTTGGCATGTAAATATTTTATAGTGGCTGCCAACAATGGTCAACCAAAGGCTTTCTACCAACTTGCAAAGATTTTTCATCTTGGTGTTGGCTTCAAGAAGAACGTTCCATTGGCTCTGGTGAGAAAAACAACAGGGGAAGGGATTGGTGCAAGTAAACTAGTAACCATGTCAGACATCGAATTGGAGCAAGGTCAACTTGATAATAAGGAAAAGCCCAAAAGGATACCTCTAACGCGTTTGGCCAAGTTGAACAAGCCTGAAGTTCCTGTCATACTGCTTGGAAGCATTGCTGCAATAATACATGGTGTCGTGTTCCCTATATTTGGCCTGTTGTTTTCATCAGTCATTAGTATGTTTTTTAAACCTCCAGACCAGCAGAGGAAAGAGTCCAGGCTATGGTCACTTCTATATGTAGGTTTGGGTTTCGTTACTCTAGTGGTTTTACCACTGCAGAATTACTTCTTTGGGATTGCTGGTGGAAAACTTATTGAAAGAGTTCGTTCGTTGACATTTGAAAAGATTGTGCACCAAGAAATTAGATGGTTTGACAATCCTGCAAATTCAAGTGGTGCAGTAGGTGCAAGGCTATCTACCGACGCTTCAACTGTGAAAAGTCTTGTTGGTTTCTCTTTTTTAGCTCTATATTGCACAAATGCTTTCACTTTCTACATAGGATCTATTTTAGTGCAACACGGGAAAGCAACGTTTCAAGAGGTTTTCAGGGTTTTCTTTTGTTTAACAATGACAGCAATCTCCGTTTCACAGTCTAGTGCTTTGGCACCAGACGCTAACAAGGCGAAAGATTCCACAACTTCAATATTTGAAATTCTTGACAGCAAACCTGATATTGATTCCAGCAGCAAGGAGGGTGTAATGCAAGAAACGGTAGTTGGTAAACCTAAGCTGTCAAAAGCTGTGCAATATTCCTCAGAGATAAGAAAGCTAAAGTTAGAACTAAAGCAAGAACGTGATCAGTTGGCCGATATTCAACTAAATTTTCGTGAGGAACAGGAATCAAACAACTCTTTCCGGGAGGAGCTTAAAATGTTAAAGTTGGAAAGAGAAAAAACATCAAAGGAGCTGAGAAAAGTACAATATGAATTGAATGTGAAAGCATCCGAAATAAAGCATCCGAAATAA 1857 0.4168 MTGDARLIEEGSGEIETAAESGYPAAQSVLGFLWGMGLLRERSKHKAFVYHHFASDGGNMQSKMALAYTYTRQDMFDKSVKLYAELAEVAVNGFLISKDSPVIEPIRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGYGVDSKNYTKAKEYFEKAAENDEVGGHYNLGVMFLKGIGVKRDVRLACKYFIVAANNGQPKAFYQLAKIFHLGVGFKKNVPLALVRKTTGEGIGASKLVTMSDIELEQGQLDNKEKPKRIPLTRLAKLNKPEVPVILLGSIAAIIHGVVFPIFGLLFSSVISMFFKPPDQQRKESRLWSLLYVGLGFVTLVVLPLQNYFFGIAGGKLIERVRSLTFEKIVHQEIRWFDNPANSSGAVGARLSTDASTVKSLVGFSFLALYCTNAFTFYIGSILVQHGKATFQEVFRVFFCLTMTAISVSQSSALAPDANKAKDSTTSIFEILDSKPDIDSSSKEGVMQETVVGKPKLSKAVQYSSEIRKLKLELKQERDQLADIQLNFREEQESNNSFREELKMLKLEREKTSKELRKVQYELNVKASEIKHPK 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01564 618 SUPERFAMILY ABC transporter transmembrane region 310 521 IPR036640 GO:0005524|GO:0016020
Vifa6g01564 618 SMART sel1 218 253 IPR006597 -
Vifa6g01564 618 SMART sel1 142 178 IPR006597 -
Vifa6g01564 618 SMART sel1 24 59 IPR006597 -
Vifa6g01564 618 SMART sel1 179 217 IPR006597 -
Vifa6g01564 618 Pfam Sel1 repeat 221 252 IPR006597 -
Vifa6g01564 618 Pfam Sel1 repeat 180 216 IPR006597 -
Vifa6g01564 618 Pfam Sel1 repeat 24 59 IPR006597 -
Vifa6g01564 618 Pfam Sel1 repeat 142 177 IPR006597 -
Vifa6g01564 618 Coils Coil 544 608 - -
Vifa6g01564 618 CDD ABC_6TM_Pgp_ABCB1_D2_like 320 522 - -
Vifa6g01564 618 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 331 475 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa6g01564 618 Pfam ABC transporter transmembrane region 331 450 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa6g01564 618 SUPERFAMILY HCP-like 123 278 - -
Vifa6g01564 618 Gene3D Tetratricopeptide repeat domain 14 279 IPR011990 GO:0005515
Vifa6g01564 618 Gene3D ABC transporter type 1, transmembrane domain 288 527 IPR036640 GO:0005524|GO:0016020
Vifa6g01564 618 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 107 218 - -
Vifa6g01564 618 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 3 195 IPR044623 GO:0030433
Vifa6g01564 618 SUPERFAMILY HCP-like 16 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01564 Vifa-Chr6 562482865 562486511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01564 447 523 Calmodulin-binding Proteins AT2G36910 35.065 4.00e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01564 K14026 - psat:127101456 419.853