Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01562 ATGGGTGAAGTAAAACAGCAAAGCATTCCGGCTTTGCCATGGATGCGAGACCCCGTCGATGTCACTCTCTCTCAACCACTACCTCTTCATTCCGTCCCTTCTCTCCACCCTAAGTTGAAGGCAGCTTTGGAGGACATGGGAATCTCAAGTCTATTCCCAGTGCAAGTTGCAGTCTGGCATGAAACGGTTGGCCCTGGCAATTTTGAGCGAGATGTTTGTGTTAACTCACCCACCGGAAGTGGAAAAACCCTCGCCTACGCTCTCCCCTTAGTGCAGATACTATCAGGCCGCATCACCAAATGTCTCCGTGCCTTAATCGTGGTCCCCACTCGCGACCTTGCTTTGCAGGTCAAGCGAGTCTTTGACGCCGTTGCGTCTCCGTTAGGCCTGCGTGTTGGCTTGGCCGTTGGTCAGTCGTCATTAGCTGATGAGATTTCGGAGCTAGTTGACATGCCGACACGTGATATAGGCATGTGTTATGATCCCAATTGTGTTTCGCTTCCTCGCTTTCAGAGTAAGGTTGATATATTAGTAGCAACCCCTGGTAGGCTAATGGATCATATTAATACTACCATAGGCTTCACGCTTGAGCATCTTCATTATCTTGTGGTTGATGAAACAGATCGATTGCTTCGCGAGGCATACCAGTCATGGTTGCCTACTGTGCTTGAACTGACCCAATCTAGTGATGATGGCTTTTTCCAACAGTCTGATTCGTTTTTCCCCTGTTCTCTTGGTGCATTAAGAACCAGAAGAAGATGTGGAGTTGAGAGGGGCTTCAAGGACAAGCCTTATCCCAGGCTGGCAAAGATGGTTCTATCCGCGACATTAACTCAGGATCCAGGCAGGCTTATTCAGCTTAATTTGCATCACCCTTTGTTGTTGAAAGCTGGAGAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTATAAACTGGTTTGTGAAACAAAGGTCAAACCCTTGTATTTAATTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCCTAGTTTTTACAAAATCTGTGGATTCCACATATCGTCTCTGCAAATTGCTGAATTGTTTTGAAGATTTGCAAATTGATATCAAAGAGTATTCTAGTCTTCAACATCAACGTGTAAGAAGTAAGACATTGAACGAATTTCGGAAAGGAATGTTTCAAGTGCTTGTATCTTCTGATGCGTTGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACGTGCCAAAATTCATAAAAACTTATGTTCATCGGGCTGGTAGGACTGCGAGAGCGGGCCAGGCTGGGCGTTGCTTCACATTGATGTCAGAAGATGAGGTTCGGCGATTTAAGAAGTTAATGCGAAAGGCTGAGGGTGGTTCTTGTCTCGAACATATCGTTCCGTCCAGTCAAATTGATGCACTCAGTACAACCTACCAATCAGCACTTACAAAATATAAGGAGATAATTTCAAAGACACGCAAGAAACCCAAGGCTTAG 1494 0.4511 MGEVKQQSIPALPWMRDPVDVTLSQPLPLHSVPSLHPKLKAALEDMGISSLFPVQVAVWHETVGPGNFERDVCVNSPTGSGKTLAYALPLVQILSGRITKCLRALIVVPTRDLALQVKRVFDAVASPLGLRVGLAVGQSSLADEISELVDMPTRDIGMCYDPNCVSLPRFQSKVDILVATPGRLMDHINTTIGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELTQSSDDGFFQQSDSFFPCSLGALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRLIQLNLHHPLLLKAGEMRYRLPENLESYKLVCETKVKPLYLIALLKSLGEEKCLVFTKSVDSTYRLCKLLNCFEDLQIDIKEYSSLQHQRVRSKTLNEFRKGMFQVLVSSDALTRGMDVEGVRNVINYDVPKFIKTYVHRAGRTARAGQAGRCFTLMSEDEVRRFKKLMRKAEGGSCLEHIVPSSQIDALSTTYQSALTKYKEIISKTRKKPKA 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01562 497 SMART helicmild6 347 431 IPR001650 -
Vifa6g01562 497 FunFam ATP-dependent RNA helicase DDX51 16 298 - -
Vifa6g01562 497 PANTHER RNA HELICASE 35 469 - -
Vifa6g01562 497 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Vifa6g01562 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 452 IPR027417 -
Vifa6g01562 497 CDD SF2_C_DEAD 308 439 - -
Vifa6g01562 497 Pfam DEAD/DEAH box helicase 53 281 IPR011545 GO:0003676|GO:0005524
Vifa6g01562 497 SMART ultradead3 47 311 IPR014001 -
Vifa6g01562 497 CDD DEADc_DDX51 39 295 - -
Vifa6g01562 497 Gene3D - 20 298 IPR027417 -
Vifa6g01562 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 473 IPR001650 -
Vifa6g01562 497 Gene3D - 306 497 IPR027417 -
Vifa6g01562 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01562 Vifa-Chr6 560806225 560811827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01562 71 446 Eukaryotic Initiation Factors Gene Family AT3G13920 24.093 2.83e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01562 K14807 - cit:102616133 666.381