Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01526 ATGGAGGAGGAGGATGAGATTCAAGCACAAAATTCATGTAAATTCCCAAGAGTTGAAAATGAAGAAGAAAATGGGAATTTGAACAGGTACAATAATTGGCACCATCACTCATCAAGAATCATAAGGGTGTCAAGAGCTTCTGGTGGAAAAGATAGGCACAGCAAAGTTATGACTTCAAAGGGTTTAAGAGACAGAAGGGTTAGGCTATCTGTAACAACAGCTATTCAGTTCTATGATCTTCAAGATAGGTTGGGTTATGACCAACCAAGTAAAGCTGTTGAATGGCTTATAAAATCAGCTTCTGATGCAATTTCTGAATTACCTTCACTCAACAACTCGTTATTCACTGATAATAGTAATAATAATAATGATAATAATAATAATAACAATGGTGTTGGTTCACCTCATGATGCTGAAATGGTTGTGGAGAATGGGGAGAATAATAATCATCAAAGTCAGAATCTTTCCTTGTCTAAATCTGGTTGTAGTAGCACTTCTGAGACGAGTAAAGGTTCTGGTTTGTCGCTTTCGAGATCTGATGTTCGTGTGAGCCGGGTTAAGGCTAGGGAAAGAGCGAGAGAAAGAACCGCGAAAGAGAAGGAAAAAGAAAATCATGATTGTTCTCACAACAATGTTAGTAATCCTTTTCATCATCACCAGAATGTTAACTCTTCTTCCATTTCTCAAACAGCTTCCTTCACCGAACTTCTTACCGGTGGAATCAACAATGCAGCAACAAGAAGTCCAAGAGGGTCAGTTGAAGAACCTAATTTCTTCAACAAAGCTCGACGACAACAGCAGCAGCAGCAACAGCAATGGAGTTCTTCTTCAGCACCAATGGATCAGTACTTTAGTCCACTGCTTATAGGAACTCCTTCTTCATCAAGAACGTGTTATCAGTTAGGACATTCACTTCATGATCATCAATCCATGACAATGTCTAACTCAGTTTCACCTTTCAGTAGTGGTGAAAACCATTCTGCAGATCAGAATCAGCATCAGATGCAGCATCAGTTTTCTTTCATACCTGATCATATGATGCAAAACGTGGTTACTTCTTCTTCTACTCAACCAAGTGGCAACAACAATAATGATTATAATCTGAACTTTACGATCTCTTCGGGCCTTGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCACCGTCTCTTTTGTCTCATCTTCAGAGGTTTTCAGTTTCATCTTTAGACGGATCCAACAATCTACCTTTTTTCATGGCAGGAGGAGGAGGAGCTGGTGCTTCTACTTCTTCTTCTCCTGCTTCTGGTTCACCTGCTCCTACTTCAATGGAGAATAATCCTCATCACCATCACCACCACCAGATTCAACACCATCCATTTTCATCTGTTTTTGATGGTAGCAGCTTACAGCTCTACTCAGATCAGAAAGGAAAACCCAAAAACTGA 1428 0.4006 MEEEDEIQAQNSCKFPRVENEEENGNLNRYNNWHHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAISELPSLNNSLFTDNSNNNNDNNNNNNGVGSPHDAEMVVENGENNNHQSQNLSLSKSGCSSTSETSKGSGLSLSRSDVRVSRVKARERARERTAKEKEKENHDCSHNNVSNPFHHHQNVNSSSISQTASFTELLTGGINNAATRSPRGSVEEPNFFNKARRQQQQQQQQWSSSSAPMDQYFSPLLIGTPSSSRTCYQLGHSLHDHQSMTMSNSVSPFSSGENHSADQNQHQMQHQFSFIPDHMMQNVVTSSSTQPSGNNNNDYNLNFTISSGLAGYNRGTLQSNSPSLLSHLQRFSVSSLDGSNNLPFFMAGGGGAGASTSSSPASGSPAPTSMENNPHHHHHHQIQHHPFSSVFDGSSLQLYSDQKGKPKN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01526 475 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 37 385 IPR005333 GO:0003700
Vifa6g01526 475 MobiDBLite consensus disorder prediction 209 227 - -
Vifa6g01526 475 MobiDBLite consensus disorder prediction 144 179 - -
Vifa6g01526 475 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
Vifa6g01526 475 MobiDBLite consensus disorder prediction 309 334 - -
Vifa6g01526 475 MobiDBLite consensus disorder prediction 1 20 - -
Vifa6g01526 475 MobiDBLite consensus disorder prediction 419 438 - -
Vifa6g01526 475 MobiDBLite consensus disorder prediction 182 208 - -
Vifa6g01526 475 Pfam TCP family transcription factor 48 202 IPR017887 -
Vifa6g01526 475 MobiDBLite consensus disorder prediction 454 469 - -
Vifa6g01526 475 MobiDBLite consensus disorder prediction 417 475 - -
Vifa6g01526 475 ProSiteProfiles R domain profile. 182 200 IPR017888 -
Vifa6g01526 475 MobiDBLite consensus disorder prediction 260 279 - -
Vifa6g01526 475 MobiDBLite consensus disorder prediction 115 134 - -
Vifa6g01526 475 MobiDBLite consensus disorder prediction 115 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01526 Vifa-Chr6 557410809 557412236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01526 28 475 TCP Transcription Factor Family AT4G18390 41.176 4.74e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa6g01526 TCP 1.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01526 - - mtr:120577367 563.533