Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01518 ATGAAGAGAGAGCATAAGCAAGAACACGAAGATGCAAGTATGAGTGGTAAATCGGAGATTTGTTGGGAAGACGACGGTGGTATGGACGAGCTTTTAGCGGTGGTTGGTTACAAGGTGAAGTCATCAGACATGGCTGAAGTTGCTGAAAAGCTTGAACAACTTGAACAAGCTATGGGTAATTTTCAAGACCATGATGAAGCCAGCATCGCTCAACACCTCTCAAACGACACCGTTCATTACAATCCTTCTGATATTTCTAATTGGCTTCAAACTATGCTTTCCAATGTTGACTCTCAACCGAATCCCTCTGTTTCCTCCTCCTCCGATAACGACCTGAACGCCATTCCCGGTAAAGCTATCTACGCGAATACTGATTCGCAGATAGAGGAGTCTGTTCCGTCACGGAAACGAGTCAAACGAATAGGTTCTTCTTCTGACGGTGAGTCAACTCGTCCTGTTGTTATGGTTGTTGAAACACAGGAGAAAGGGATTATTCTTGTTCATACTTTAATGGCTTGCGCTGAGGCTGTTGAACAGAATAATCTTCCTGTAGCGGAAGCTCTTGTGAAACAGATCGGATACCTAGCGGTGTCGCAAGAAGGTGCTATGAGAAAAGTTGCTACCTATTTCGCTGAAGGTTTAGCACGAAGGATCTACGATGTGTTTCCACAGCATTCTGTTTCCGATTCGCTTCAGATCCATTTCTATGAAACTTGTCCTTACTTGAAGTTTGCTCACTTCACTGCCAATCAAGCTATTCTTGAAGCTTTTCAAGGAAAATCACGCGTTCATGTTGTTGATTTCTCGATCAATCAAGGGATGCAGTGGCCGGCGCTTATGCAGGCACTTGCCTTGCGTCCTGGTGGTCCTCCTGCTTTTCGTCTCACCGGCATCGGGCCTCCGGCGTCGGATAACTCCGATCATCTACAACAGGTTGGTTGGAGGCTTGCTCAGTTTGCTCAGACGATTCATGTTCAGTTTGAGTATCGTGGTTTTGTTGCTAATAGTTTGGCTGATCTTGATGCTTCCATGCTTGAACTCCGGTCACCGAATACCGAATCCGTCGCTGTTAACTCTGTTTTCGAGCTTCATAAACTCAACGCGCGCCCTGGTGCGCTTGAGAAGGTGTTTTCTGTTATCCGTCAGATTCGGCCGGAGATTGTCACCGTCGTTGAGCAAGAAGCGAATCACAACGGACCGGCTTTTCTCGAACGGTTTACTGAGTCGCTTCACTATTACTCCACGCTGTTTGACTCGCTGGAGAGTTCATTGGTTGAACAGCAGGATAAGGCTATGTCGGAGGTTTACCTAGGGAAGCAAATCTTCAACGTGGTGGCGTGTGAAGGAACGGACCGAGTCGAGCGTCACGAAACACTGAACCAGTGGAGGAACCGGTTCGGTTTAGCCGGGTTTTCTCCGGTCCATTTGGGATCCAACGCGTTCAAGCAAGCGAGTATGCTGTTAGCGCTTTTCGCAGGTGGGGATGGTTACAAGGTGGAAGAGAATGATGGTTGTCTCATGTTAGGATGGCACACTAGGCCATTGATTGCAACCTCTGCTTGGAAACTCGCCGCCAACTCAATGGCGGTTTCGGTTTCACACTGA 1605 0.4766 MKREHKQEHEDASMSGKSEICWEDDGGMDELLAVVGYKVKSSDMAEVAEKLEQLEQAMGNFQDHDEASIAQHLSNDTVHYNPSDISNWLQTMLSNVDSQPNPSVSSSSDNDLNAIPGKAIYANTDSQIEESVPSRKRVKRIGSSSDGESTRPVVMVVETQEKGIILVHTLMACAEAVEQNNLPVAEALVKQIGYLAVSQEGAMRKVATYFAEGLARRIYDVFPQHSVSDSLQIHFYETCPYLKFAHFTANQAILEAFQGKSRVHVVDFSINQGMQWPALMQALALRPGGPPAFRLTGIGPPASDNSDHLQQVGWRLAQFAQTIHVQFEYRGFVANSLADLDASMLELRSPNTESVAVNSVFELHKLNARPGALEKVFSVIRQIRPEIVTVVEQEANHNGPAFLERFTESLHYYSTLFDSLESSLVEQQDKAMSEVYLGKQIFNVVACEGTDRVERHETLNQWRNRFGLAGFSPVHLGSNAFKQASMLLALFAGGDGYKVEENDGCLMLGWHTRPLIATSAWKLAANSMAVSVSH 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01518 534 MobiDBLite consensus disorder prediction 1 21 - -
Vifa6g01518 534 Pfam Transcriptional regulator DELLA protein N terminal 29 100 IPR021914 -
Vifa6g01518 534 Pfam GRAS domain family 166 522 IPR005202 -
Vifa6g01518 534 Gene3D - 27 96 IPR038088 -
Vifa6g01518 534 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 116 518 IPR005202 -
Vifa6g01518 534 SMART DELLA_2 29 106 - -
Vifa6g01518 534 Coils Coil 37 64 - -
Vifa6g01518 534 ProSiteProfiles GRAS family profile. 157 522 IPR005202 -
Vifa6g01518 534 FunFam DELLA protein GAI 27 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01518 Vifa-Chr6 545270104 545271708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01518 23 526 GRAS Transcription Factor Family AT1G14920 67.113 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa6g01518 GRAS 3.5e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01518 K14494 - gmx:547718 759.214