Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01500 ATGAATGATGTAGTCAAGCAGCGTCAGATGAGCAGCAGCCACCACCGTCGTATGGACAAATCCCATACCTTTCTTCACAGTTTTCTCAAACACTTCAAATTCGGTTCAACTACAGAAGAAAACAATGAAGCTGAGATACAAAAAATGGCTTCACGGGAGCAGAAGATATTTTCATATGAAACCCTTGTTGCTGCCACCAAGAATTTTAATTCTAAGTTAGGTGAAGGAGGTTTTGGCCCTGTCTACAAGGGAAAATTGAGTGATGGTAGAGAAATTGCGGTGAAGAAATTATCACAGACATCAAATCAAGGGAAGAAGGAGTTCATGAATGAGGCAAAGTTGTTAGCTCGTGTGCAGCATAGGAATGTGGTGGATTTGTTGGGTTATTGTGTTCATGGAACAGAGAAGCTACTTGTTTATGAGTATCTTCCTCATGAGAGTCTTGACAAATTTCTATTCAAACCTGATAAGAGAGAGCAGCTTGATTGGAAGCGTAGGTTTGGAATAATCACTGGCGTAGCAAAGGGATTACTCTATCTCCACGAAGATGCGCACCAATGCATAATCCACCGTGACATCAAGGCTAGTAACGTATTGCTTGCTGACAAATGGACCCCCAAGATTGCAGATTTTGGTATGGCACGTCTCTTCCCCGAAGATCAAACTCAAGTCAATACACGTGTGGCTGGAACAAACGGTTATATGGCGCCCGAATATATGATGCACGGAAGACTCTCTGTTAAGGCCGACGTGTTTAGCTATGGAGTTTTGGTATTAGAGTTGATCACTGGCCAAAGAAACTCTTCATTTAATTTGGATGTTGAGGAGCATAACCTTTTCGATTGGGCATACAAAATGTACAAGAAAGGAAAGTGCTTAGAAATTGTAGATACTACATTAGTATCTACAGCTATAACCGAGCAAGTAGCTATGTGTATTCAGCTAGCTCTTCTATGCATCCAAGGAGATCCTCAACTACGTCCAACAATGAGACGTGTCGTGGTGATGCTTTCAAGGAATTCACCACATTGCCACATGGAAGAGCCAACAAGACCAGGAATACCAGGTAGCAGATATAGAAGACCTCCTAGAAACTCAGGTTTGTCTTCAACAATTGGTAGTACCTCTGGTGGTGTTTCATATTCTAAGTCTTCTGATTCAAGTAAAAACGGTACCACTCTTTCTAGAACTGTCACTGGTACAAGTTCAGCTACTGCTGAGTTAGATCCAAGAGGGAAACGTCCAATGAAGGATTAG 1257 0.4193 MNDVVKQRQMSSSHHRRMDKSHTFLHSFLKHFKFGSTTEENNEAEIQKMASREQKIFSYETLVAATKNFNSKLGEGGFGPVYKGKLSDGREIAVKKLSQTSNQGKKEFMNEAKLLARVQHRNVVDLLGYCVHGTEKLLVYEYLPHESLDKFLFKPDKREQLDWKRRFGIITGVAKGLLYLHEDAHQCIIHRDIKASNVLLADKWTPKIADFGMARLFPEDQTQVNTRVAGTNGYMAPEYMMHGRLSVKADVFSYGVLVLELITGQRNSSFNLDVEEHNLFDWAYKMYKKGKCLEIVDTTLVSTAITEQVAMCIQLALLCIQGDPQLRPTMRRVVVMLSRNSPHCHMEEPTRPGIPGSRYRRPPRNSGLSSTIGSTSGGVSYSKSSDSSKNGTTLSRTVTGTSSATAELDPRGKRPMKD 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01500 418 MobiDBLite consensus disorder prediction 343 418 - -
Vifa6g01500 418 Pfam Protein tyrosine and serine/threonine kinase 69 336 IPR001245 GO:0004672|GO:0006468
Vifa6g01500 418 ProSiteProfiles Protein kinase domain profile. 67 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01500 418 SMART serkin_6 67 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01500 418 FunFam Cysteine-rich receptor-like protein kinase 2 143 345 - -
Vifa6g01500 418 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 393 - -
Vifa6g01500 418 MobiDBLite consensus disorder prediction 363 406 - -
Vifa6g01500 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vifa6g01500 418 FunFam Cysteine-rich receptor-like protein kinase 10 33 142 - -
Vifa6g01500 418 CDD STKc_IRAK 73 339 - -
Vifa6g01500 418 SUPERFAMILY Protein kinase-like (PK-like) 54 345 IPR011009 -
Vifa6g01500 418 Gene3D Phosphorylase Kinase; domain 1 30 142 - -
Vifa6g01500 418 Gene3D Transferase(Phosphotransferase) domain 1 143 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01500 Vifa-Chr6 540123655 540126736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01500 37 354 Receptor kinase-like Gene Family AT4G11530 50.932 1.58e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa6g01500 PK_Tyr_Ser-Thr 2.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01500 - - gmx:100795769 622.083