Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01499 ATGATGACTTCAAATTTAAACTCGGAACCTGAAAATCCGTCCGAGGCGCCTCATGGTCTAGATTCAATGACGCTTGACTTGACACTCAATATCAGTTCGAGTGAAGGCGATTTTAAGGGTTCAAGTGATGCTAGCAGTGAAGTGGGAGCTGCTACTGAAGCTTATGCTTTTCCATCGGTAACTCCAAGGGTTTTTGCATGTAATTATTGCAAGAGGAAGTTCTTTAGCTCGCAAGCATTAGGAGGTCATCAGAATGCTCACAAAAGAGAGAGGACGATGGCTAAACGCGCGATGAGAATGGGAATGTTCACCGACAGGTATACAAGTCTAGCATCTCTTCCTCTTCATGGTTCGCCTTTTCGGTCTCTTGGCGCTGAAGCTCATGGTGCAATGCATCAAAGAACATATATGCAGCCGACTTCGACAGTGAGGGCTCCTGATATGAGAGCTGCTGCAAAATTCAACAGAAATCATTTCGGATCAGTAGTTTTCGTGGAAGATGAGGATGTAGGTTTCTTTTGGCCTGGAAGTTTCAGACAGGTAGATCAGGGAAATTCTAGTTTTGCTCCAATGACACCTCCTCCACCACACACATCTGCATCTACATCTACATCTCCCGATCTCACTTTGAAGCTATAA 639 0.4476 MMTSNLNSEPENPSEAPHGLDSMTLDLTLNISSSEGDFKGSSDASSEVGAATEAYAFPSVTPRVFACNYCKRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTDRYTSLASLPLHGSPFRSLGAEAHGAMHQRTYMQPTSTVRAPDMRAAAKFNRNHFGSVVFVEDEDVGFFWPGSFRQVDQGNSSFAPMTPPPPHTSASTSTSPDLTLKL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01499 212 MobiDBLite consensus disorder prediction 1 21 - -
Vifa6g01499 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Vifa6g01499 212 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 40 153 IPR044246 GO:0009788
Vifa6g01499 212 SUPERFAMILY beta-beta-alpha zinc fingers 62 93 IPR036236 -
Vifa6g01499 212 Gene3D Classic Zinc Finger 59 110 - -
Vifa6g01499 212 MobiDBLite consensus disorder prediction 184 212 - -
Vifa6g01499 212 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Vifa6g01499 212 FunFam Zinc finger protein 2 41 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01499 Vifa-Chr6 538815704 538816342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01499 58 212 C2H2 Transcription Factor Family AT1G66140 44.624 1.44e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g01499 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01499 - - gmx:100775305 276.174