Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01498 ATGATTGCAAACAAAGATCTTCGTATTGGTGTTGCTGACTCTGATGGTGAAGAGATGGGTGGTTCTGGTTCTGGTTCTGGTGGGTCTAAGAATAACTCAGGTATGCAGGAACTAACCCTAAGCTATCTTTGTGGAAGTCAAAAATTGAGTCTTGTTGATAAAGATGTTCATGGTGAGAGTTTTCTGAATTCGTTTGATAGAATGAGTCAAAAGGGTAAAGAGGTTATGGTTTCTGAGAATTCAAACCAAGATGGGAAATGGGTTGAGAGAGATTTTCTGAGTTTGAGTGAAACAAGAGAGGATTCTTCAAAGAGATCTGTTGAAGAAGAAGATGTTGAAAGAGAAAGAGAGGGTGTTAGGGATAAGAAACCGAAGCTTGAGACATTGAATCTCTCTCTTGCTCCACCTGATGTGTCTCTTTCTCTCACTGCTTCAAACGCCTTACATAATAATGGTGATCAGCAACAGCAGCTGGTTAGGACCAAACCTAGTAGGCCATCAACTACAGTTACTACTTATTCAACTGAGTATACAGCACCTTCTTTGTCTTACTCTTATTCGCATCCATTTTCGCACAATCCAAGTTGCTCTCTAACGCGGAATTCCACTGAGAATTTTGAGTTTTCGACGAGCAAAGATGATCATATTTGGAACTGTGGTGAAGGGACTAATGGTTCTGTTCATAGCAGGTTTAAACCAATTGGTGATGGTGTTGTTGGTTTGTCGAATCATGGAGGTGGAACCGGTATCAGTTTGTTCATGCAACAAGGGAATAATAGTCAGTATAAAACTACTAGTTCGGAAAATCATTCTTTTTTTCCTTCTGAATTGCCTGCTAGGCCTAGATTTGAAGCTCATTCGGGGGATTCAAGAGGAAATAACTCAGAGAATCTGAGAGTGTTTGAAGGTTTAGATGGTGGTAAGATGAGGAATATTTCAAGACCAGAGAGAATTGTTTGGGATATTGTTTCAGAATCTGTCCTTATTGTTTCGCTGACAACTCAGGAGTTTACCGGTGAAGTAATGGCATCAACTCAGGAATACTTGAAGAATCTGATTGAGAACAAGAAAGAAGAATTGGTCAGCCTTCAAAACCGGCTTGAGAAAAGGTCTGATCTTACCAAGGATAATCTTTCAAAGGGCAATAAAGTTCAGTTAGAGATTTTACTTGCCATCAAGATGGGGCTGTCGAGCTTCTTATACGGTAATCTTCAATTATCTGAGATGGTAGAGATTTTCTTGTATAGGAGATGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGATTGTGACTGTAAGATTTGCTCGGGAAATAAAGGGTTCTGTAGCTCTTGTATGTGTCCTGTTTGTTTGAACTTCGATTGTGCAAGTAACACTTGTAGCTGGATTGGATGCGATGTTTGTTCACACTGGTGCCATGCTGTATGTGGCCTCCAAAGGAAGCTTATCAAACCAGGGCCAAGCTTGAAGGGGCCTTCTGGGACCTCGGAAATGCAGTTTCATTGTATTGGATGCGGACATGCCTCAGAAATGTTTGGATTCGTCAAAGACGTCTTCATGTGTTGTGCAAAGGATTGGGGACTTGAGACCTTGTTGAAAGAGCTTGACTGTGTCAGGAGGATTTTCATGGGAAGTGAAGATCACAAAGGGAAGGAATTGCATTTTAAAACCGATGACTTGCTATTAAAGCTTCAAACTAAAATAGTATCTCCTTCAGATGCCTGCAATTACATCATGCAATTTTTCAACTACGCGGAGAACATGACAAACTATCCGGCTTCTGGTTTTTCTTCAAAGGAATTGGTAGTCCATCAAGCCAACCTTCCAAAGGACACACTATCTCTTCCAAAAGCTAACTCTTCAATACCAAAATACGCTTATGACTCAAGCTACTCGAGGCCACATTCCAGTGCTTCGTCAAAAGATCTTCATCAAAAAGACCTCAAAGCTTCCATCTTAAGCGAGCTAAAAAACGACGCTGATCTTCAACTGGCAGCTTTACTAAGCAAAGGCGGGATTGAAAATCTGGAGAGCATTGTGCGGATAAAGGAGGCAGAAGCGAAAATGTTCCAAACTAAAGCAGATGAAGCGAGGAGGGAGGCAGAAGGGTTTCAGAAAATGGTCAGTTTGAAGACTGCACAGATGGAAGATGAGTACACAACAAAGCTTTCGAAACTGAGTTTGCATGAGACCGAGGAAACGCAGAGGAGGAAATTGGATGACTTGAAAGTCGTGGAAAATTCGTATTTTGACTACTATAAAATGAAGAAGAGAATGCAAGATGAGATTGATGGTTTGTTGCAGAGAATGGAGGCAACAAAACAGCAATGGATTTAA 2343 0.4093 MIANKDLRIGVADSDGEEMGGSGSGSGGSKNNSGMQELTLSYLCGSQKLSLVDKDVHGESFLNSFDRMSQKGKEVMVSENSNQDGKWVERDFLSLSETREDSSKRSVEEEDVEREREGVRDKKPKLETLNLSLAPPDVSLSLTASNALHNNGDQQQQLVRTKPSRPSTTVTTYSTEYTAPSLSYSYSHPFSHNPSCSLTRNSTENFEFSTSKDDHIWNCGEGTNGSVHSRFKPIGDGVVGLSNHGGGTGISLFMQQGNNSQYKTTSSENHSFFPSELPARPRFEAHSGDSRGNNSENLRVFEGLDGGKMRNISRPERIVWDIVSESVLIVSLTTQEFTGEVMASTQEYLKNLIENKKEELVSLQNRLEKRSDLTKDNLSKGNKVQLEILLAIKMGLSSFLYGNLQLSEMVEIFLYRRCRNVTCKSLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHAVCGLQRKLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLLKELDCVRRIFMGSEDHKGKELHFKTDDLLLKLQTKIVSPSDACNYIMQFFNYAENMTNYPASGFSSKELVVHQANLPKDTLSLPKANSSIPKYAYDSSYSRPHSSASSKDLHQKDLKASILSELKNDADLQLAALLSKGGIENLESIVRIKEAEAKMFQTKADEARREAEGFQKMVSLKTAQMEDEYTTKLSKLSLHETEETQRRKLDDLKVVENSYFDYYKMKKRMQDEIDGLLQRMEATKQQWI 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01498 780 Coils Coil 346 373 - -
Vifa6g01498 780 Coils Coil 682 702 - -
Vifa6g01498 780 MobiDBLite consensus disorder prediction 150 171 - -
Vifa6g01498 780 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 528 547 IPR004082 -
Vifa6g01498 780 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 715 737 IPR004082 -
Vifa6g01498 780 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 333 355 IPR004082 -
Vifa6g01498 780 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 409 430 IPR004082 -
Vifa6g01498 780 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 455 475 IPR004082 -
Vifa6g01498 780 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 676 696 IPR004082 -
Vifa6g01498 780 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 66 779 IPR004082 -
Vifa6g01498 780 CDD PHD_OBE1_like 448 507 IPR047578 -
Vifa6g01498 780 MobiDBLite consensus disorder prediction 98 123 - -
Vifa6g01498 780 Coils Coil 758 778 - -
Vifa6g01498 780 MobiDBLite consensus disorder prediction 1 35 - -
Vifa6g01498 780 Pfam Coiled-coil region of Oberon 640 769 IPR032535 -
Vifa6g01498 780 Pfam PHD - plant homeodomain finger protein 418 542 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01498 Vifa-Chr6 538372271 538375328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01498 418 515 PHD Gene Family AT5G57380 29.592 6.13e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01498 - - gmx:100820216 1155.58