Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01489 ATGGTTATGAAAGCAAAGAATGTCAATCTCAAAAACAAGAACAATAATGCAACCGAGATTCATTTCAGAGGCGTCAGGAAACGACCGTGGGGCCGTTACGCCGCCGAGATCAGAGATCCCGGCAAGAAAAGCCGAGTCTGGCTCGGCACGTTTGACACCGCCGAAGAAGCCGCTAGAGCCTACGACGCCGCCGCTCGTCAGTTCCGTGGTCCCAAAGCCAAAACCAACTTCCCGCCTCCTTCCGACAACAAAGAAAACAACCTCAACAACATTAACAGCAATCAGAGTCTAAGCCAGAGCAGCACCGTTGAGTCGTCCACGCCTGAGCGTGCTCTCACGCGCTCTCGTGAAGTTCCGATTGGTGGCGTCATGGATCGTTTTCCGTTTCTCTCGATCCAGCAACAAATCATGCCGTTTCCCGCTGCTGCTGTGGACGGAATGGTAACAACTGCTGTGAACCCGGTTTTCTTTTATGACCCGTCCGGTCGAGCTGAGTTTATGAACCAGCGGTTTTCGACTAGGTTTGAACCGGGTCCGGTTGAGTTTAACATCGGGTTTGGCGGTAGTAGTGGGGTTCAGAGTGACTCCGATTCGTCATCTGTTGTTGATTGTCAGCCAAAGAGAGCTCTCAATCTTGATCTTAACTTAGCTCCACCAATGGATGTTTAA 669 0.5112 MVMKAKNVNLKNKNNNATEIHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPPPSDNKENNLNNINSNQSLSQSSTVESSTPERALTRSREVPIGGVMDRFPFLSIQQQIMPFPAAAVDGMVTTAVNPVFFYDPSGRAEFMNQRFSTRFEPGPVEFNIGFGGSSGVQSDSDSSSVVDCQPKRALNLDLNLAPPMDV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01489 222 FunFam Ethylene-responsive transcription factor 2 21 79 - -
Vifa6g01489 222 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Vifa6g01489 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 161 - -
Vifa6g01489 222 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Vifa6g01489 222 MobiDBLite consensus disorder prediction 79 109 - -
Vifa6g01489 222 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Vifa6g01489 222 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Vifa6g01489 222 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Vifa6g01489 222 MobiDBLite consensus disorder prediction 67 116 - -
Vifa6g01489 222 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Vifa6g01489 222 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Vifa6g01489 222 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01489 Vifa-Chr6 536826253 536826921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01489 19 220 AP2-EREBP Transcription Factor Family AT5G44210 47.573 3.42e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa6g01489 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01489 K09286 - gmx:100801924 213.772