Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01487 ATGAGCAGTGTACTTTGTGAAGAGCAACAAAAGCTTCTTCTTAACCTCAAAAAATCCCTCACTGTGAGAGACAACATTATCGACAACATCCCACCAAGAAAGCTCCTAACCCGCCGACAACCCACCAACACCTCCGCCGACATGTTTTCCGAGGAAGATCCGTATTCCTCCGACCACTTCCGCATGTACGAGTTTAAAATCCGCCGATGCACACGTAGCCGCAGCCACGACTGGACCGACTGTCCCTTCGCTCACCCCGGCGAAAAGGCTCGCCGTCGCGACCCTCTCCGGTTTCAATACTCCGGCGAGGTTTGTCCTGATTACCGCCGCGGAAACTGCGAACGCGGCGACGCGTGCGAATTCTCCCACGGTGTTTTCGAAAGCTGGTTGCATCCTTCGAGATACAGAACTGAAGCGTGTAAAGATGGTAAGAATTGTAAGCGCAAAATTTGCTTTTTTGCTCATACACCCCGTCAACTGAGGGTTTTGCTTTTGCCACCCCCTCCTTCACCACCTCCTCAGAACAACGTTAAAAACTGTTGTTCTTTTTGTCATTGCTGTTCTAATTCTTCTGCTTCATCACCCACTTCTACTTTGTTGAGTGGACCTTATTTTTCTTCTTCAAATTCACCACCTTTGTCTCCTTTGTCGAATTCAAATCCCAAAGATGTGCATGTTCTCAACGAGCTTATTCGATCTATGGAGAGTTTCAATTTTGGTGGTGATGATTCTCCTTCTCCTGTTTCTGCCGGAAAATATTATAGTTCAAGTGGTAGTAGCAAGTTTTTGAGGGAAGAACAAAGGGTTAACGTTGTTGATGATGATGTTAGTGCCAACCCAGATTTTGGGTGGGTGAATGAGTTGCTCATGTAG 873 0.4696 MSSVLCEEQQKLLLNLKKSLTVRDNIIDNIPPRKLLTRRQPTNTSADMFSEEDPYSSDHFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPLRFQYSGEVCPDYRRGNCERGDACEFSHGVFESWLHPSRYRTEACKDGKNCKRKICFFAHTPRQLRVLLLPPPPSPPPQNNVKNCCSFCHCCSNSSASSPTSTLLSGPYFSSSNSPPLSPLSNSNPKDVHVLNELIRSMESFNFGGDDSPSPVSAGKYYSSSGSSKFLREEQRVNVVDDDVSANPDFGWVNELLM 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01487 290 Gene3D - 97 163 - -
Vifa6g01487 290 PANTHER UNKEMPT FAMILY MEMBER 49 250 IPR045234 -
Vifa6g01487 290 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 124 IPR000571 GO:0046872
Vifa6g01487 290 SMART c3hfinal6 134 157 IPR000571 GO:0046872
Vifa6g01487 290 SMART c3hfinal6 99 125 IPR000571 GO:0046872
Vifa6g01487 290 ProSiteProfiles Zinc finger C3H1-type profile. 99 126 IPR000571 GO:0046872
Vifa6g01487 290 FunFam Zinc finger CCCH domain-containing protein 66 57 125 - -
Vifa6g01487 290 SUPERFAMILY CCCH zinc finger 99 127 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01487 Vifa-Chr6 536460318 536461190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01487 55 289 C2H2 Transcription Factor Family AT5G07500 40.083 6.82e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa6g01487 zf-CCCH 5.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01487 K23047 - psat:127100681 487.263