Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01485 ATGGCCATTCTCCACCACTCCACCGCCTTCAGAACCGCCGTCGACGACCCCATCTTGCCTTTTCTCCGGTCAATCAAAATAGCCCTAGAAGATTCCAAATGTTCCACTCAGAATCTCTGCAAGTTACTCAAAGATTGCATTGATAAATTCAAGGACAATCGCCGCTACCGAAACGATCCCAGATTTCTCAAGATCTGGCTCCTATATATGGATGCTAGTGCTGATTTTGATAGTGTTTTCAAGGGAATGCTGAACAGTAATATATGTGCCAATGATTCTTCACTTTATGTATATTCTGCATGTTTTTTTGAAGCAAAGGGTAGATTGTGCGATGCTGAAACGATCTACAAGCTCGGGATTTCCAAAAATGCAGAGCCAATTAAGTGGTTGGAGAAGGCACATGCCTTATTTCTCAGTAGAATTACTGAAATATGTAATGCTGCTTCAAGCCGGAAGGTTGATCATATAGAATCTGCTACTTTGGAAAACAATGGCATTAATCCATGGGACACCTCTACTATGAATGACCTTTTGAAGAAGATAAATCCTTTAATGAGGAAATTTGAGGGGTATTGTTCGAGCACTAAACCTTATACAGGAAAAGTGGCCTTATCCACTTTAAAGAATGCATCAAGGAATAAAGTTATAGAGATAGGTGGAATGAAGTACCACATCAAGGGCTGTGCCGGACAGGGTGGTTTTGCTCAAGTATACAAGGCAAATGTCAACAACGATTCTGATGATGTTGTGGCACTAAAGATTCAAAAGCCAGCTTTCTCTTGGGAATTTTACATGTACCGTCAGCTTGATCAGCGCATTTCTGGCAGAGAAAGGTCAAGCTATGGTTTTGCTCATAGAGTTCATCTCTTCTCTGACTGTAGCATACTCGTCTGTAACTATTTAGCTCACGGGACCCTACAGGACGTGATCAACTCATATGTGGTAGTAGGAAAATCCATGGAAGAAGTATTGTGCATTTATTACACAACAGAAATGTTGCACACGATTGAAACTTTGCATGATGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTAGTTCGCTATGCTAGTGGTAACCTCACAGAAGATGGGTTTCTAGACCGAAGCGGTTATTGGCATGATCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGGATCGATCTTCATCTCTTTCCAGATCACACAATATTTAAGGCAGATTGTAGAACTTCTGGTTTTCGATGCATTGAGATGCAGGAGAATAAGCCATGGAAATTTCAGGTAGACGCTTATGGCCTTTGCGGTGTTGTCCATGTGATGCTGCATAATTCCTATATGCAAATTGTTAAAAAAGAATCATCTGATGGGGGCTCCGCGTATCATCCCAGACTACCCTTTAAACGTTATTGGAACGTGGAGCTCTGGAAGAATTTCTTCTCTAAGATGCTAAATAACTACCCCTGCCATGATGATAAGAGGTTGCTGCAGGAATTAAAGAAGTCCTTCGAGGACTATATGAACTCTGATCCTCAACGTATAAGGAAACTCAAGGAGTTACTAGCGAAGCAAAGGGTTTCTCTATGTTCTGCTTAG 1581 0.4162 MAILHHSTAFRTAVDDPILPFLRSIKIALEDSKCSTQNLCKLLKDCIDKFKDNRRYRNDPRFLKIWLLYMDASADFDSVFKGMLNSNICANDSSLYVYSACFFEAKGRLCDAETIYKLGISKNAEPIKWLEKAHALFLSRITEICNAASSRKVDHIESATLENNGINPWDTSTMNDLLKKINPLMRKFEGYCSSTKPYTGKVALSTLKNASRNKVIEIGGMKYHIKGCAGQGGFAQVYKANVNNDSDDVVALKIQKPAFSWEFYMYRQLDQRISGRERSSYGFAHRVHLFSDCSILVCNYLAHGTLQDVINSYVVVGKSMEEVLCIYYTTEMLHTIETLHDVGLIHGDFKPDNLLVRYASGNLTEDGFLDRSGYWHDQGLCLVDWGRGIDLHLFPDHTIFKADCRTSGFRCIEMQENKPWKFQVDAYGLCGVVHVMLHNSYMQIVKKESSDGGSAYHPRLPFKRYWNVELWKNFFSKMLNNYPCHDDKRLLQELKKSFEDYMNSDPQRIRKLKELLAKQRVSLCSA 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01485 526 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 158 521 IPR015661 GO:0007094
Vifa6g01485 526 ProSiteProfiles Protein kinase domain profile. 223 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01485 526 SMART serkin_6 223 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01485 526 Gene3D Transferase(Phosphotransferase) domain 1 221 523 - -
Vifa6g01485 526 Gene3D - 8 158 - -
Vifa6g01485 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Vifa6g01485 526 Pfam Mad3/BUB1 homology region 1 13 120 IPR013212 -
Vifa6g01485 526 ProSiteProfiles BUB1 N-terminal domain profile. 6 168 IPR013212 -
Vifa6g01485 526 Pfam Protein kinase domain 223 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01485 526 SUPERFAMILY Protein kinase-like (PK-like) 222 480 IPR011009 -
Vifa6g01485 526 SMART mad3_bub1_i 3 120 IPR013212 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01485 Vifa-Chr6 534992166 534996812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01485 222 442 CBL-interacting serine-threonine protein kinases AT4G24400 26.106 4.41e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Vifa6g01485 Pkinase 1.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01485 K02178 - gmx:100783171 828.165