Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01465 ATGGAATTCGTTGGGAAAACCGTTCTGAAAGAGGTGGACGGGGCTGGGATTGTGTCCGGAACTGTGAAATCTTTCGACAATTCGTCCGGTTTTCTCAAGATCCTTTTCGAAGACGGTCATTGTGAGGAGATAGAAGTTTCCGAAGCTGCTCCGCTCTTGGAAATTCAACCGGAGCTTCCTAAAGTCAAGGCGCGGGTCGGTCGGAAACCTAAAAAGCGACGCCTGCTTGAGCGGAGTGGCGGAGCCACATCGTCTTCAGGTAATTATGTTACTGATACTTTGGTGGCGGGTAGTGAATTTAGCGGGAATGAAGGGAATATTAGCGTTAGTGTGAATGAAACTAGTGGGAGTGTGGAAAAACTAGGAAATGGAAATAGGTTTGGTGTTCATGGGATTTTGAATTTGAATGTGGATGTTTCTGATGTTAATAATAATTCTAATACTAATGGAATTTTTGTTAAAGATGATATTGATTTGAATTCTGGACTTAATTTGAATGAGGATATTGATTTGAATGATGTGTCTGAATCGCCTATTAACAATGAAGGTGATTTGAATAGGAAAGATTGTATTGATTTGAATTTGGATGTGAATGTGAATGACGTCGAGGGTGTGAATTTGGGAGAGGAAGCTTTGCTGCGGGAATGTAAGTTTGATTTGAATGTCGGTGTGTGTGAAGAAGTTAAGGAAGCTCGGGGTTATGCTGATGGAAATGGATATTGTGAGATGGGACAGCTGCGAGAAGAAGAGTGTGATGATAAGCATAGGTCTATGGAAGTTGACGGTGTTCGTGTTAATTTGAATTGTGCGTCTGATGCTGTCAAATTGGAGGATAAGGAAGTTGATGATCCTGTTTCCATCGAAGCTGGTGTTGTCCCAGTTAATGAATACCAATCTGATCTTGGAAGTCCATGCAAACAAGGAAGTAGTCAGAGGAAGAGAAGAAAAGTGTCCGATAATGTAAAAGCCACTCCGGACACGGCTTTGAGGAGGAGTTCTCGCCGGACATCAGCTAGAAAACCAGTTTCACCTGCAGTATCAGAGCAGGTTACTGATGATCCTTTGTCGTCCTTGGAAACCAGTGTAGCAGAAGAAAAACCTTCGATACCTGAAAATGAGAAATATGAACAGTGCAATGTTCCTATTCCGAAGCTGCAATTACCCCCTTCTTCCGAAAATTTGAATTTAGATGGCATTCCTGTTCTTGATTTTTTTTCTGTTTATGCTTGTTTAAGATCATTCAGTACCTTGTTGTTTTTGAGTCCATTTGAGATGGAAGATCTTGTGGCGGCACTTAAGTCCGAAATCCCTAGTGTATTATTCGATAGCATTCATGTTTGTATTTTGCAAACTCTGAGAAAGCATTTGGAATTCCTTTCCACTGAGGGTTGCCAATCTGCGTCAATTTGCCTGAGGAATCTTAACTGGGATTTCTTGGACCTTGTCACATGGCCCATGTTCTTGGCCGAGTACCTTCTGATTCACAGTTCACAATATAAAACTAGTTTTGATGCTAACCTCTCAATATTGGTAACTGACTACTACAAACAACCTGTCATTTTGAAGCTTGAGATTCTTCAATACCTGTGTGATGATATGATTGATGTAGACACCATAAGGTCGGAGCTTAACAGAAGGTCTTTGGTAACAGAGACTGGTATGGGTTTTGATCAGAATATTTGTTTTGACACGAGCAAGAAAAAAAAGGCTGTAATGGATGTTTCTGGAGGCTCTTCCTTGACTGAAGAGATGGTGGATGACACAACTGACTTGAACAGTGATGAATGTTGTCTTTGCAAGATGGATGGAAATTTAATATGTTGTGATGGTTGCCCTGCTGCATACCACTCAAGGTGTGTCGGGATTGCAAGTAAAAATCTTCCTGAAGGTGACTGGTATTGCCCTGAGTGTGCTATTGGCAAACACCAGACATCGATGAAATCACAACGTTCACTCCGAGGAGCAGACTTGTTGGGGATGGATCCTCATGGCTGTCTTTATTTTGATAGTTGTGGTTACCTGTTAGTTTCTAAGTCATCAGATGCGGGGTCCTTGTTCAATTACTACCATGTAAATGATATACCTGTTGTGATTGAAGTTCTAAAATCCGTGGATACTTTATATGGAGACTTATTAATGGCTATCTACAAGAATTGGGATATTCCGGCTGACTTAAATGCAGGGGCTAGTAATTTGGCAGTCTTTAATCGAAGTTCAATCAAGAACATGCAAACGACGGCTAAATATTATTCTACGTCCACATCTTTAGCACCTTTTACTTCTTCAGTAACATTTATGGACAAGAATCTAGTTGTTGATCAGAAAAAGTTGGAGAAAAATTCAACTATTGACGGTTGTACTCGTGATGGCCAAGAGTTTCCAAAAGCTGGGAACCAATTAGACTCAACCATAGAAAGTCCTTGTATTGCCTCAGAAGGATCAGCTGATACTGCACAGATGAGATCAGGCATTGAGAGTATTCAGATGCACAGGCTATACGATTCCAATAGATCGGATGCATCCTTAAATCAATCAAGAATACCAGAAAAAGACTTTCCCGTTGGTGACTGTTCTTTGGCATCTTCCAGACTAGATGGGGAACATAATATTAAGTTAAGATCCATAGGTGTTAGCAGTATCCCCTATATGTGCAATAAGGATACATCACAAGCTCCTTATGGGACTGACTACATAAACTATTACAGCTTTGCAAGGATGGCCTCATCAGTTGCACCGGAGTTGATGTGTAAGATATCTGAAAAAATCAATAGAAATATTATAGTGACTGAAGAAGAAATAATTTCAGACCAAGCAAAGACCATCATTAAGAAGTCCACCAATTTTTGTTGGCCAAGTATTCAAAACCTGAATGCAGCTGCCCACAAGGAAAAATGTGGATGGTGCTTTTCTTGCAAGGTTGCAAATGATGACAGAGATTGCATATACCTTTCTGTGGTGAAACCACTTTATGAAGTGTCTAAAAGTACTTCAGCTGGGCCTCAACCCAAGATCCAGAATGGACATCTTAGAGAGATAATATGTCAAATTTTCTCTCTTGAGGTTCGATTGCGAGGTCTTTTATTGGGTCCATGGTTGAATCTGCATCAAACTAATCTTTGGCATGAGGATCTTTTGAAGACATCTGATCTTCTTTCTGTTAAACGATTATTGCTTCTTTTGGAATCCAATTTGAGACATCAAGCACTTTCAGTCGATTGGTTAAAGCATGTGGATTCTGTGGTTACTATGGGATCAGCTACTCATATTGTGGTGGGTTCATCACACACATCCTCAAAGCATGGTATTGGAAAGAAAAGAGCCAGACATTCAGATATTGAATCCAGTTCATCTTCAAAGACTACCGGTGGTTTGGGAATGTATTGGTGGAGAGGTGGTAGGCTTTCTCGAAAGTTGTTTAATTGCAAGGTCCTTCCTCGTTCCTTTGTTACCAAGGCTGCTAGACAAGCTGGGTTTAGAAAGATACCAGGTATTTTATATCCTGAAAATTCAGACTTTGCTAAGAGAAGCAGATGTGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGCGTTGATCAGCTGGCTTTACAGGTTAGAGAACTCTACTCAAACATAAGGTGGCATGATATTGAGAATAACCATCCTCTACATGTACTGGACAAGGAATCTAGAAAATCATCCAAGCTATTCAAAAAAGCAATTGTGCGTAGGAAGTTGCCTGATGGACAATCTGTGAAATATCTTCTAGATTTTGGAAAGAGGAGGGCTATTCCGGATATTATTACTAAACACGGTTGTTTATTGGTGGAGGAACCCGAAAGTGAGAGGAAGAAGTATTGGCTGAACGAGTCTTATGTTCCTTTACGTCTTGTAAAGAATTTTGAGGAAAAAAGGATCGTCCGCAAGTCCAATAATAAGAAACATGGAAAAATTCTTGGGATTGATAGAGTAAAGAGGGCTCCTCAACAAAGGGGGTTTTCATATTTGTTTTCTAGAATGGAAAGATCTGCTTGTTATCAGTGTGAGCATTGCAAAAAAGATGTTCCAATCAGGGAAGCTGTGAGTTGCCTTTATTGCAAAGGATATTTTCACAAGAGGCATGTCAAGAAATCTGGCGGCACAACTACTGAATGCACATATTCATGTCACAGATGCCAGGATGGGTTGCAAGTAAAAACTAATACCAATGGAAGGAAAGTTGGCACAAAACTGCAGAAGATTCAATCAGAGAATTGCACAAGTGATCCATTGGTCTGTAAAACAGCGAATGTTAAAGGCAACAATAAAAAGGCATCAAGTAAGGTGCGGAAGGTGATATCTCAAAACAATAAGAAGATCCAATCAGTTGTACCTCTTCGGCGTTCTACTAGAAAAGTCAAATCCATGTATTCACGCAATCAAATGTTTGGAGGATATAAAAAAGGAATGCAGAGTAAAAAGAATGTAGGGCGTAAAAAAGGAAAGAACAGTAGATCCAAGAAGGTGACCTCACAAAAGTCCAAGAAAACTACTGGTCAACGCAAGACGTGGGATGTAACTATTGCACGTGAGAAGAGATCAAAACATTTTAGCAGTTACTGGCTTAACGGTCTTTGGTTTTCTAGAAAGCCAAATGATGAACGAGTAATGCTTTTTGAAGCGAAAAAGCAATCTATCTCCGCTGTTATTTCTGGTTCCTTTGATTATCCTAAATGCCGCCTTTGTTGTGGAGATGAATCCACTTCAAATCATATTGCTTGTGAAAAATGTGGAGATTGGTTTCATGGGGATGCTTTTGGTCTCACCGAAGAGAATGCTAGTCAACTTATTGGATTTAAGTGCCATGTTTGTCGTGGAAGGGATGCTCCAATCTGTCCCCATGTGAAAATTAATGCACTGTCTCGCATTGAACCCAATGCCTCAACTGAGCGTGCAGAGGAATGA 4923 0.4038 MEFVGKTVLKEVDGAGIVSGTVKSFDNSSGFLKILFEDGHCEEIEVSEAAPLLEIQPELPKVKARVGRKPKKRRLLERSGGATSSSGNYVTDTLVAGSEFSGNEGNISVSVNETSGSVEKLGNGNRFGVHGILNLNVDVSDVNNNSNTNGIFVKDDIDLNSGLNLNEDIDLNDVSESPINNEGDLNRKDCIDLNLDVNVNDVEGVNLGEEALLRECKFDLNVGVCEEVKEARGYADGNGYCEMGQLREEECDDKHRSMEVDGVRVNLNCASDAVKLEDKEVDDPVSIEAGVVPVNEYQSDLGSPCKQGSSQRKRRKVSDNVKATPDTALRRSSRRTSARKPVSPAVSEQVTDDPLSSLETSVAEEKPSIPENEKYEQCNVPIPKLQLPPSSENLNLDGIPVLDFFSVYACLRSFSTLLFLSPFEMEDLVAALKSEIPSVLFDSIHVCILQTLRKHLEFLSTEGCQSASICLRNLNWDFLDLVTWPMFLAEYLLIHSSQYKTSFDANLSILVTDYYKQPVILKLEILQYLCDDMIDVDTIRSELNRRSLVTETGMGFDQNICFDTSKKKKAVMDVSGGSSLTEEMVDDTTDLNSDECCLCKMDGNLICCDGCPAAYHSRCVGIASKNLPEGDWYCPECAIGKHQTSMKSQRSLRGADLLGMDPHGCLYFDSCGYLLVSKSSDAGSLFNYYHVNDIPVVIEVLKSVDTLYGDLLMAIYKNWDIPADLNAGASNLAVFNRSSIKNMQTTAKYYSTSTSLAPFTSSVTFMDKNLVVDQKKLEKNSTIDGCTRDGQEFPKAGNQLDSTIESPCIASEGSADTAQMRSGIESIQMHRLYDSNRSDASLNQSRIPEKDFPVGDCSLASSRLDGEHNIKLRSIGVSSIPYMCNKDTSQAPYGTDYINYYSFARMASSVAPELMCKISEKINRNIIVTEEEIISDQAKTIIKKSTNFCWPSIQNLNAAAHKEKCGWCFSCKVANDDRDCIYLSVVKPLYEVSKSTSAGPQPKIQNGHLREIICQIFSLEVRLRGLLLGPWLNLHQTNLWHEDLLKTSDLLSVKRLLLLLESNLRHQALSVDWLKHVDSVVTMGSATHIVVGSSHTSSKHGIGKKRARHSDIESSSSSKTTGGLGMYWWRGGRLSRKLFNCKVLPRSFVTKAARQAGFRKIPGILYPENSDFAKRSRCVAWRAAVEMSTSVDQLALQVRELYSNIRWHDIENNHPLHVLDKESRKSSKLFKKAIVRRKLPDGQSVKYLLDFGKRRAIPDIITKHGCLLVEEPESERKKYWLNESYVPLRLVKNFEEKRIVRKSNNKKHGKILGIDRVKRAPQQRGFSYLFSRMERSACYQCEHCKKDVPIREAVSCLYCKGYFHKRHVKKSGGTTTECTYSCHRCQDGLQVKTNTNGRKVGTKLQKIQSENCTSDPLVCKTANVKGNNKKASSKVRKVISQNNKKIQSVVPLRRSTRKVKSMYSRNQMFGGYKKGMQSKKNVGRKKGKNSRSKKVTSQKSKKTTGQRKTWDVTIAREKRSKHFSSYWLNGLWFSRKPNDERVMLFEAKKQSISAVISGSFDYPKCRLCCGDESTSNHIACEKCGDWFHGDAFGLTEENASQLIGFKCHVCRGRDAPICPHVKINALSRIEPNASTERAEE 1640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01465 1640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1559 1617 IPR013083 -
Vifa6g01465 1640 ProSiteProfiles Zinc finger PHD-type profile. 593 640 IPR019787 -
Vifa6g01465 1640 Pfam DDT domain 401 454 IPR018501 -
Vifa6g01465 1640 SUPERFAMILY FYVE/PHD zinc finger 1562 1613 IPR011011 -
Vifa6g01465 1640 PANTHER PHD FINGER FAMILY PROTEIN 2 1616 - -
Vifa6g01465 1640 CDD PHD2_CHD_II 596 637 - -
Vifa6g01465 1640 MobiDBLite consensus disorder prediction 66 88 - -
Vifa6g01465 1640 MobiDBLite consensus disorder prediction 1470 1509 - -
Vifa6g01465 1640 MobiDBLite consensus disorder prediction 298 370 - -
Vifa6g01465 1640 SMART testlast3 398 458 IPR018501 -
Vifa6g01465 1640 MobiDBLite consensus disorder prediction 338 363 - -
Vifa6g01465 1640 SUPERFAMILY FYVE/PHD zinc finger 579 639 IPR011011 -
Vifa6g01465 1640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 587 655 IPR013083 -
Vifa6g01465 1640 SMART PHD_3 595 638 IPR001965 -
Vifa6g01465 1640 SMART PHD_3 1564 1611 IPR001965 -
Vifa6g01465 1640 MobiDBLite consensus disorder prediction 1478 1501 - -
Vifa6g01465 1640 Pfam PHD-finger 596 638 IPR019787 -
Vifa6g01465 1640 ProSitePatterns Zinc finger PHD-type signature. 596 637 IPR019786 -
Vifa6g01465 1640 ProSiteProfiles DDT domain profile. 398 458 IPR018501 -
Vifa6g01465 1640 MobiDBLite consensus disorder prediction 1094 1120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01465 Vifa-Chr6 527960818 527970173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01465 1 1622 PHD Transcription Factor Family AT5G12400 41.538 0.0 1098
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vifa6g01465 DDT 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01465 - - mtr:11438137 2247.24