Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01463 ATGTTTAGGTTGCAAGAAGGTTCATTTTCTGCTATTTCTTCATCCTTAAAGTTCTTCTCCATGATGCCACATTCATCTAGCTTAGGATCTACACATCCTTGGATTAAAGAACTGAAATCTGAAGAAAGGGGTTTGTATTTGATCCATTTGTTGCTCACTTGTGCTAATCATGTAGCTTCTTGTAATCTTGAGAATGCAAATGCTTCACTTGAGCAAATTTCGATGCTTGCTTCTCCTGATGGTGATACTATGCAGAGAATCGCAGCATATTTTACCGAAGCGCTTGCTGATCGGATACTGAAAACATGGCCTGGTCTTCATAAAGCGCTAAACTCGACTAGAATGGTTATGGTTTCCGAAGAGATTCTTGTGCAGAAGCTCTTTTTTGAGCTTTTTCCTTTCTTGAAGGTAGCGTTTATTCTTACAAATCAGGCTATCGTTGAGGCGATGGAAGGGGAGAAAATGATTCATGTAATTGATCTCAATGCTGCTGAACCTGCTCAGTGGATTGCACTTCTTCAAGTTTTGAGTTCGCGTCCCGAAGGCCCTCCGCATTTGAGGATTACCGGGGTTAATCCGAAAAAAGAGGTTTTGGATCAGATAGCTCATAGATTGATTGAAGAAGCTGAAAAATTGGATATACCATTCCAGTTCAATCCTGTTGTTAGTAAATTAGAAAACCTCGATTTAGACAAACTTCGAGTAAAAACCGGGGAGGCATTAGCGATTAGTTCGATTCTCCAATTACATACCTTGTTAGCCTCAAATGATGAAACCATGAAGAGAAAACCTCCTCCTCTTTTGTTGAAATCTCCAAATGGAATTCACTTGCAAAGAATCCAGCCGATGAACCAAACTACCTTAGGCGATTTGCTCGCGAAAGATATGGCTAACAGATACACCAAAAGTCCTGACTCAACCTCGTCATCATCGCCAGCTTCTTCAAACACTTCAAATCTAATGAGTATGGAGAATTTTCTCACTGCATTGTGGAGTTTATCACCGAAAGTAATGGTTGTAACAGAACAAGACTCTAATCATAACGGCACAACCCTTATGGAGAGGCTACTAGAAGCTCTATATTCTTACGCAGCGGTATTCGATTGTTTGGAATCAACAGTCTCAAGAAACTCATTGGAAAGAACTAGAGTAGAGAAAATGCTTTTTGGCGAGGAAATCAAGAACATTATTGCATGTGAAGGGTTAGAAAGAAAGGAAAGGCACGAAAAGCTTGATAAGTGGTTCATGAGATTCGATTTAGCTGGTTTCGGTAACGTGCCTTTAAGTTATTTTGGTAGGTTACAAGCGAGGAGGTTTCTGCAGAGTAATGGTTGCGAAGGATATAGAATGAGGGAGGAAAATGGTTGCGTGGTAGTATGTTGGCAAGATAGGTCCTTGTTTTCGATATCAGCCTGGAGAACTAGGAAGTAA 1431 0.4039 MFRLQEGSFSAISSSLKFFSMMPHSSSLGSTHPWIKELKSEERGLYLIHLLLTCANHVASCNLENANASLEQISMLASPDGDTMQRIAAYFTEALADRILKTWPGLHKALNSTRMVMVSEEILVQKLFFELFPFLKVAFILTNQAIVEAMEGEKMIHVIDLNAAEPAQWIALLQVLSSRPEGPPHLRITGVNPKKEVLDQIAHRLIEEAEKLDIPFQFNPVVSKLENLDLDKLRVKTGEALAISSILQLHTLLASNDETMKRKPPPLLLKSPNGIHLQRIQPMNQTTLGDLLAKDMANRYTKSPDSTSSSSPASSNTSNLMSMENFLTALWSLSPKVMVVTEQDSNHNGTTLMERLLEALYSYAAVFDCLESTVSRNSLERTRVEKMLFGEEIKNIIACEGLERKERHEKLDKWFMRFDLAGFGNVPLSYFGRLQARRFLQSNGCEGYRMREENGCVVVCWQDRSLFSISAWRTRK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01463 476 ProSiteProfiles GRAS family profile. 38 473 IPR005202 -
Vifa6g01463 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 468 IPR005202 -
Vifa6g01463 476 Pfam GRAS domain family 47 473 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01463 Vifa-Chr6 527427112 527428542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01463 1 476 GRAS Transcription Factor Family AT1G50420 64.938 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa6g01463 GRAS 4.5e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01463 - - gmx:100814131 746.117