LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g01459	ATGCTCCAAAGCTTGGTCCCTCGACCCCCTCTCTCTTCTGAACCTAATATGAACACAAAACGCTCTGAACGCGAACACGACGACGGCGACTCCTCCCTTCAACAACCATCTTTCAAAAGACCTAACTACTCCGGCGAGAAAACCGTGGCGGAAGGTGAAACACACGACGAGGAGCAAGCGTTTGAGCCTCAGAATGAAGGCGAATCCATAGGTTTGAAACTCCTAGGGCTATTACTCCGATGCGCTGAGTGCGTCGCTACGGATAACCTCGACTTTGCTAATGATCTCTTACCGGAGATTACCGAGCTTTCCTCACCGTTCGGGAGTTCGCCAGAGCGAGTTGGCGCGTACTTCGCACAGGCTCTACAAGCGCGAGTGGTGAGTTCTTGCCTTGGTAGTTACTCGCCGTTAACGGCTAAATCGGTAACCCTAACTCAGTCGCAGAGAATCTTCAACGCGTTTCAATCCTACAACTCGGTTTCACCGCTGGTGAAATTCTCGCACTTCACTGCTAATCAAGCTATTTTCCAAGCTGTAGACGGTGAGGATCGTGTTCATATCATTGACCTTGATATCATGCAAGGACTTCAATGGCCAGGATTGTTTCATATTCTCGCTTCACGATCCAGGAAGATCCGTTCAGTGAGAATCACCGGCTTCGGATCTTCATCGGAGCTTCTAGAATCAACGGGAAGAAGACTCGCCGATTTCGCGAGTTCGCTCGGACTTCCGTTTGAGTTTCATCCGGTGGAAGGTAAAATCGGAAGCGTAACAGAACCGAGTCAACTCGGTGTTAGACCAAACGAAGCCATCGTGGTTCACTGGATGCACCATTGCTTGTACGATATAACCGGAAGCGATTTAGGGACGTTGAGATTGCTGACTCAGCTTAGGCCAAAGCTAATCACGACCGTTGAGCAGGATCTCAGCCACGCTGGTAGCTTCCTGGCGAGGTTTGTGGAGGCTTTGCATTATTACAGCGCGTTGTTCGACGCGCTGGGGGATGGTTTGGGTGCGGACAGTGTGGAGAGGCATATGGTGGAGCAGCAGCTGTTGGGGTGTGAGATAAGGAACATTATCGCCGTGGGAGGGCCCAAGAGGACTGGCGAGGTGAAAGTTGAGAGATGGGGGGATGAGTTGAAACGGGCCGGGTTTCGACCCGTATCGCTTCGGGGCAACCCGGCTGCACAAGCCAGTTTGTTGTTGGGGATGTTTCCTTGGAGAGGGTATACACTTGTGGAGGAGAATGGTTCTTTGAAGCTTGGATGGAAGGATCTTTCTCTTTTGATTGCGTCTGCTTGGCAACCGTCTGATTTGATTACTTACACTTGA	1332	0.5105	MLQSLVPRPPLSSEPNMNTKRSEREHDDGDSSLQQPSFKRPNYSGEKTVAEGETHDEEQAFEPQNEGESIGLKLLGLLLRCAECVATDNLDFANDLLPEITELSSPFGSSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQAVDGEDRVHIIDLDIMQGLQWPGLFHILASRSRKIRSVRITGFGSSSELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTEPSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSVERHMVEQQLLGCEIRNIIAVGGPKRTGEVKVERWGDELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYT	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g01459	443	Pfam	GRAS domain family	76	435	IPR005202	-
	Vifa6g01459	443	PANTHER	OSJNBA0084A10.13 PROTEIN-RELATED	55	430	IPR005202	-
	Vifa6g01459	443	ProSiteProfiles	GRAS family profile.	65	435	IPR005202	-
	Vifa6g01459	443	MobiDBLite	consensus disorder prediction	1	65	-	-
	Vifa6g01459	443	MobiDBLite	consensus disorder prediction	1	17	-	-
	Vifa6g01459	443	MobiDBLite	consensus disorder prediction	18	33	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g01459	Vifa-Chr6	525183325	525184656	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g01459	64	438	GRAS Transcription Factor Family	AT5G41920	71.053	0.0	536

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRAS	Vifa6g01459		GRAS	6.6e-115	CL0063

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g01459	-		-	gmx:100816249	753.821