Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01455 ATGTCGCGCCAGTCCACGGGTTCCGCTTTCACCAAATCCAAGACCCTCGACAACAAATATATGCTGGGAGATGAGATTGGGAAAGGAGCTTATGGTCGAGTTTACAAAGGTTTGGACCTGGAGAATGGAGATTTTGTTGCAATTAAGCAAGTTTCTTTGGAGAATATTGCCCAGGAGGATCTCAACATCATCATGCAAGAGATTGATTTGTTAAAGAATTTGAACCACAAAAACATTGTAAAGTATCTTGGATCTTTGAAGACAAAGAGTCACCTGCATATAGTACTTGAGTATGTGGAGAACGGCTCACTTGCAAATATTATCAAGCCAAATAAATTTGGACCCTTTCCAGAATCATTGGTTGCAGTTTATATTGCCCAGGTTTTGGAAGGCTTGGTTTACCTACACGAACAAGGTGTTATCCATCGTGATATTAAGGGTGCAAATATATTGACAACTAAAGAGGGTCTTGTCAAACTTGCTGATTTTGGCGTTGCAACAAAATTAACAGAGGCTGATGTTAATACTCATTCTGTTGTTGGAACACCGTACTGGATGGCACCGGAGGACCACTCTGGTATGTGA 585 0.4103 MSRQSTGSAFTKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTKSHLHIVLEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEDHSGM 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01455 194 ProSiteProfiles Protein kinase domain profile. 20 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01455 194 FunFam Aurora kinase A 11 102 - -
Vifa6g01455 194 Pfam Protein kinase domain 21 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01455 194 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 15 189 - -
Vifa6g01455 194 SMART serkin_6 20 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01455 194 SUPERFAMILY Protein kinase-like (PK-like) 17 193 IPR011009 -
Vifa6g01455 194 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vifa6g01455 194 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vifa6g01455 194 Gene3D Transferase(Phosphotransferase) domain 1 16 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01455 Vifa-Chr6 523589359 523595313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01455 1 189 MAP Kinase Kinase Kinase AT3G13530 94.180 6.39e-121 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Vifa6g01455 Pkinase 4.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01455 - - gmx:100813256 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01455 6 523589359 523595313 Vifa6g01455 6 523589359 523595313 ECH