Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01454 ATGTCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGCTGTACAGTTATTGAGCTTCTTACATGCGTGCCTCCTTATTATGATTTGCAGCCTATGCCGGCTCTTTTCCGTATTGTCCAGGATGAACACCCTCCAATTCCTGATAGTCTTTCGCCTGACATTACTGATTTTCTGCATCAATGTTTTAAGAAGGATGCTAGACAAAGACCTGATGCTAAAACGCTGTTGTCTCACCCCTGGATTCAAAACTGCAGACGTGTCCTGCAGTCTTCTCTTCGTCATAGTGGATCATTAAGAAATATAGAGGAAGATGATTCTGCAGATGGAAAAGTTTCTGGTGGTGATCGTAAGCTTGCAGGTGGAAACTCTTCTGTGGAGAAACAGGGCACTACGGCTGCTGATAGCAGCAGATCTCAAGAGGAAAGTGCCTCAGATTCTAATTTTCCCAACGAAAGAACAGATAAGGCGGATGATTTCATATCGGATGAGGTTTTTACCTTAGCCATTCATGAGAAGTCATTTCAACAAACTGGTTCTGGCAAACTCTCTCATGATGGAGAAGTGGGTAGTTCTGAGCCTACTGGTAATCATGAAATTTCAAATGCCAAAGAACTTCACGAAGTCACAATGAATGGAGAAGTTGGATCACCACAGTCAAGAGGAGTGGCTAATAAAGTTGGAGTAAAAGACAGTTCCATCAATAATGGCAAAAAATCATTTGCTTTTGGACCAAGAGGACTTGATAAAGGTCCCACAAAGGCAATGAAGACACTGCACCCTGCAGAAGGAAATGAGCTGAGCAAATTTAGTGACCCTCCGGGAGATGCCTACTTGGATGATTTATTTCCTTTAGACAAACGACATGGGGAGGTTGTAGGTGAGGCATCCACATCTGCATCAACTTCACACATGGCAAAAGGCAATGTATCTTCAATTGACGGAGGAGAAAAAGACCTGGCCAAAGAGCTGAGGGCTACAATCGCAAGAAAGCAATGGGAGAAAGAGAGTGAAATTGGGCAGGCAAACAACGGTGGGAACCTTTTACACCGAGTTATGATAGGTGTTCTAAAAGATGATGTGATTGATATAGATGGTTTGGTATTTGATGAAAAACTTCCTGGAGAGAACCTTTTTCCTCTGCAGGCCGTTGAGTTTAGCAAATTAGTTGGTTCATTAAAACCCGAGGAATCAGAAGATGTGATTGTCTCTGCCTGTCAGAAACTCATTGGTATATTTCAGCAGCGCTCAGAGCAGAAGCTTGTTTTTGTTACCCAGCATGGTTTACTTCCTCTAACTGACTTGCTTGAAGTTCCTAAAACACGTGTCATATGTTCTGTGCTTCAGCTTATAAATCAAATAATTAAAGACAACACTGATTTTCAAGAAAATGCTTGTCTTGTTGGATTGATTCCTGCAGTCATGAGCTTTGCTGTACCTGATCGTCCCCGGGATATTCGTATGGAAGCAGCTTTTTTTTTACAGCAGCTTTGTCAGTCAAGTTCTTTGACGTTACAAATGTTTATAGCTTGCCGTGGAATACCTGTTTTGGTGGGATTTCTCGAAGCTGATTATGCCAAGTACAGGGAAATGGTTCATCTGGCTATTGATGGCATGTGGCAGGTATTTAAGCTTCAGCAGTCAACGCCTAGAAATGATTTTTGTCGGATAGCTGCAAAAAATGGCATACTCCTTAGGCTTATAAATACACTTTATAGCTTAAATGAGTCAACCCGGTTAGCATCTATGTCTGTTGGGGGAGGTTTTTTAGTTGATGGTCCGATTCCACGACCACGTTCTGGTATATTGGATCCTACTCATCCTTTTTCAATTCAGAATGAGGCACCGCTGTCTTCAGCAGATCAGCAAGATCTTTCTAAATTAAGGCGTGGAGTTCTTGATCATCACTTAGAGCCTTCACATTCTTCATCATCCAATCCTAGAAGATCCGATGCTAACTACCAAATGGATGTCGATAGACCTCAGTCAAGCAATGCTGCAGCTGAAGGTGTGCCACTAGAAAAAAGTTCAAATCTTGCATCCAGGGAATCTTCAGCGGGTACAATGAAAGAAAGAGAAAACGTCGATCGTTGGAAAAGTGATCCTTCTAGAGCTGATGTTGAACTAAGACAACGTCTTAGTATTTCTGCCAACAGGACATCAACAGATAGGCCTACAAAGTTGACAGAAACGCCCTCAAACGGGTTATCAGTAACAGGAGCAACTCAGCAAGAGCAAGTTAGGCCTCTTCTTAGCTTGTTGGAGAAAGAGCCCCCATCTGGACGTTTATCTGGACAGCTTGAATATGTACGTCAGTTTTCAGCGTTAGAAAGACATGAAAGTGTACTCCCTTTGTTACACGCTTCTGAGAAGAAAACAAATGGTGAACTAGACTTTTTGATGGCAGAATTCGCAGATGTTTCTCAACGTGGAAGGGAAAACGGAAATCTTGACTCCAGTGCTAGAGTGTCTCAAAGAGTTACTCCCAAGAAATTAGGGACTTTTGGTTCTAGTGAAGGAGCTGCTTCCACATCTGGGATCGCATCTCAGACAGCATCAGAAGTTGCAAAAGAGTACCTTGAAAAAGTGGCAGATCTTTTGCTTGAGTTTGCACAAGCGGATACAACGGTGAAGTCTTATATGTGTAGTCAAAGCTTGCTTAGTCGACTTTTCCAGATGTTTAATAGGGTAGAACCACCTATTTTGTTGAAGATACTGAAGTGTATTAATCACCTGTCAACTGATCCAAATTGCTTAGAAAATCTTCAGCGTGCTGAGGCAATCAAATACTTGATACCAAACCTTGAACTCAAAGAAGGGTCTCTTGTATCAGAGATACATCATGAGGTCCTGAACGCACTGTTCAACTTATGCAAGATAAATAAGAGGAGACAGGAACAAGCAGCTGAAAATGGAATCATTCCCCATCTAATGCAATTCATCACATCAAATTCTCCCTTGAAACAATATGCATTGCCTCTGTTGTGTGACATGGCGCATGCATCTCGTAACTCAAGGGAGCAGTTAAGGGCTCATGGTGGTTTGGATGTCTATTTGAACCTTCTTGAGGATGAGTTTTGGTCTGTGACTGCACTAGATTCAATTGCTGTTTGCTTAGCCCATGACAATGATCATAAGAAGGTTGAACAAGCATTGCTGAAGAAAGATGCAGTTCAGAAGCTGGTGAAGTTCTTCCAGAGCTGTCCAGAGCAGCATTTTGTACACATATTGGAGCCGTTCTTGAAAATCATCACAAAATCTGCACGGATCAACACCACTTTGGCTGTTAATGGATTGACGCCATTACTCATTGCAAAGCTTGATCATCAAGATGCTATAGCTCGTCTTAATTTACTCAGGCTAATAAAGGCTGTTTATGAACATCACCCTCAGCCCAAGAAACTGATTGTGGAGAACGATCTCCCCGAGAAACTCCAAAACTTAATAGGGGAACGCAGAGATGGCCAAGTGTTGGTTAAACAGATGGCAACTTCATTACTTAAAGCATTACATATAAACACTGTGTTGTAA 3531 0.4211 MSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLHQCFKKDARQRPDAKTLLSHPWIQNCRRVLQSSLRHSGSLRNIEEDDSADGKVSGGDRKLAGGNSSVEKQGTTAADSSRSQEESASDSNFPNERTDKADDFISDEVFTLAIHEKSFQQTGSGKLSHDGEVGSSEPTGNHEISNAKELHEVTMNGEVGSPQSRGVANKVGVKDSSINNGKKSFAFGPRGLDKGPTKAMKTLHPAEGNELSKFSDPPGDAYLDDLFPLDKRHGEVVGEASTSASTSHMAKGNVSSIDGGEKDLAKELRATIARKQWEKESEIGQANNGGNLLHRVMIGVLKDDVIDIDGLVFDEKLPGENLFPLQAVEFSKLVGSLKPEESEDVIVSACQKLIGIFQQRSEQKLVFVTQHGLLPLTDLLEVPKTRVICSVLQLINQIIKDNTDFQENACLVGLIPAVMSFAVPDRPRDIRMEAAFFLQQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGMWQVFKLQQSTPRNDFCRIAAKNGILLRLINTLYSLNESTRLASMSVGGGFLVDGPIPRPRSGILDPTHPFSIQNEAPLSSADQQDLSKLRRGVLDHHLEPSHSSSSNPRRSDANYQMDVDRPQSSNAAAEGVPLEKSSNLASRESSAGTMKERENVDRWKSDPSRADVELRQRLSISANRTSTDRPTKLTETPSNGLSVTGATQQEQVRPLLSLLEKEPPSGRLSGQLEYVRQFSALERHESVLPLLHASEKKTNGELDFLMAEFADVSQRGRENGNLDSSARVSQRVTPKKLGTFGSSEGAASTSGIASQTASEVAKEYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDEFWSVTALDSIAVCLAHDNDHKKVEQALLKKDAVQKLVKFFQSCPEQHFVHILEPFLKIITKSARINTTLAVNGLTPLLIAKLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01454 1176 ProSiteProfiles Protein kinase domain profile. 1 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 686 708 - -
Vifa6g01454 1176 Gene3D - 378 593 IPR011989 -
Vifa6g01454 1176 Gene3D Transferase(Phosphotransferase) domain 1 1 99 - -
Vifa6g01454 1176 SUPERFAMILY ARM repeat 388 1068 IPR016024 -
Vifa6g01454 1176 Pfam Protein kinase domain 6 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 124 147 - -
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 812 847 - -
Vifa6g01454 1176 SUPERFAMILY ARM repeat 1046 1158 IPR016024 -
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 99 157 - -
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 713 743 - -
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 811 847 - -
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 99 113 - -
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 638 662 - -
Vifa6g01454 1176 SMART arm_5 961 1000 IPR000225 GO:0005515
Vifa6g01454 1176 SMART arm_5 416 456 IPR000225 GO:0005515
Vifa6g01454 1176 SMART arm_5 915 959 IPR000225 GO:0005515
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 636 743 - -
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 229 249 - -
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 175 199 - -
Vifa6g01454 1176 FunFam MAP3K epsilon protein kinase 1-like 832 1171 - -
Vifa6g01454 1176 Gene3D - 832 1173 IPR011989 -
Vifa6g01454 1176 SUPERFAMILY Protein kinase-like (PK-like) 5 83 IPR011009 -
Vifa6g01454 1176 FunFam MAP3K epsilon protein kinase 1 380 594 - -
Vifa6g01454 1176 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 3 460 1148 - -
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 601 622 - -
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 295 309 - -
Vifa6g01454 1176 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01454 Vifa-Chr6 523554712 523574226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01454 1 1176 MAP Kinase Kinase Kinase AT3G13530 65.635 0.0 1520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Vifa6g01454 Pkinase 3.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01454 - - lja:Lj3g3v3513490.1 1957.96