LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g01453	ATGTACTTGAGGAGAATACGGTGCCGAGATCGGAGATGGGCTTTGTTGTTGCAACCATCAAAATACTTCTTTAGGCCGAAATCATCCGATCATCATTGCTTTCAGTCTTTATCACCTAAGACCGCCGTGAGAGAATATTCTTCACATGGCGGTGTTATCAAAAGAGATCTCTTAGGTTCAGATTCATGTGGTCATGTTTCATCTAGATATAGTTTTGCCGGTCTGAACAAAAGGCCTAGTTTTTGTCTTAGGAGTTCTCAGATACAAGCTTTTAGTTCTGAAAGCGATGGAAGTAGTGCAAGTGAGAATAAACAAGTACATGTGAACGATGGAGGTGATTTGGATAAGGGGAAGAATCAGTTAGGTAAGTCTGGTGGAGATGTTAAATTCAGCAATACACATGCACAGCTTGGAGAACAGGATCAGGAGGAATGGCTTCATAATGAGAAGCTTGCTGTAGAAAGTAAAAGGAGAGAATCGCCATTTTTGACAAGAAGGGATAAGTTTAAAAATGAGTTTCTGAGAAGAATTACTCCATGGGAGAATATAAACATTTCGTGGGACACATTTCCTTATCACATAAATGAGCATACGAAAAGTCTTCTTACGGAATGTGCTGCTTCCCGTTTGAGACATAATAAGCTTGCTTCCTCTTTTGGCACCCGCCTTGCATCTTCAAGTGGAAGAATATTGCTTCAAAGCATTCCAGGCACTGAGCTCTATCGGGAAAGATTAGTTAGAGCTCTTGCACAAGATTTACAAGTACCGTTGTTGGTGCTTGACAGCAGCATCCTTGCTCCTTATGATATTGACGATGATCAATCGTCAGACTATGAGTCTGATGATGATAATGCAGAATCTGGGGATGAGGGTGGTCTAGAATGTGAGAATGAGGATGATAATGATGCTAGTAATGAAGAAGAGTGGACTAGCAGTGCTGAAGCGAAGTCAGATGCAAGCGATAATGAAGATGCACTAGCATCTGCTGAAGCAGCCCTTAAGAAAGTTAAAGCCGCTGTTCAGAAACTTATCCCTTACAATGTTGATGAATTTGAGAAGATGGTGACTGGAGATGAGAGTACTGAGTCATCGAATTCTGATGATGCCAAGTCAGCTGATAAATCTGGATCTCAGCTAAGAAAAGGTGACCGCGTGAAGTACATCGGCCCTTCTATTAAATTTACAAATGATGATAGGATCAAACTGGGGAAGATACCGACGTCTGATGGTCCAACTAATGCTTATACTATTTTACCGGAAAGGGTTTCAATTTTAAATAACGGTCAAAGAGGAGAGGTATACGATGTTAATGGAGATCAAGCTGCCGTTATCTTGGATGATAATGTAGAGAAGGCCAATGAGAATGAGGTTGAGAACCCTAACAATGATCGTCCAAAAGCCTCAGTTTATTGGATAAATGTTAAGGACATTGAGAACGATCTTGATGCTCAAACACAGGATTGCTACATAGCCGTGGAGGCTTTATGTGAGGTTTTGAATTCCAAACAACCTCTTATAGTATATTTTCCGGATAGTTCACAGTGGTTGCATAAATCGCTTCCAAAGTCAAGCCGAAATGAGTTTTTTCAAAAGGTTGAAGAGATGTTTGACCGGTTATCTGGTCCTGTAGTATTGATTTGTGGGCAAAACAAAGTTCATTCTGGAACAAAGGAGAAAGAAAAATTTACGATGATACTCCCAAACATTGGACGTGTTGCTAAGCTGCCTCTTTCTTTGAAGCACCTGACTAATGGATTTAAAGGGGGAAAGACATCAGAAGAGGATGACATTAACAAGCTTTTCTCTAATGTTTTGAGTGTACATCCACCTAAGGAGGAGAATCTACAGGTAGTATTCAAAAAACAACTCGAGGAAGACAGGAAAATTGTGATTTCACGTAGTAATTTGAATGAATTACGAAAGGTTCTTGAAGAACACCAGCTATCATGCGTTGACCTCTTGCAAGCGAATACTGATGGCATCATTTTAACAAAGCAAAAAGCTGAAAAAGTGGTAGGCTGGGCAAAAAACCATTACTTGTCGTCATGCCTGCTTCCTTCTGTTAAAGGAGAAAGATTGTGCATACCTCGCGAAAGTCTTGAAATTGCAATCTCAAGGATGAAAGGCATGGAAACTATGTCACGAAAACCTTCTCAGAACCTCAAGAGCCTTGCGAAGGATGAGTTTGAGAGCAATTTCGTTTCATCTGTTGTACCTCCTGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAAGATGTTAAGAAGGCACTTCAGGAACTTGTTATTCTTCCAATGAGAAGGCCCGAGCTTTTCACTCGTGGAAACCTGTTGCGGCCCTGCAAAGGAATATTGCTTTTTGGTCCTCCTGGAACTGGGAAAACTCTTCTGGCCAAGGCACTTGCAACAGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAGAAACTAACCAAAGCACTTTTCTCATTTGCCAGCAAGCTTGCACCTGTCATTATATTTGTTGATGAGGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCATGGGATGGATTGAGGTCCAAAGAGAATCAAAGAATCCTCATTCTTGGTGCAACAAATCGGCCATTTGACCTTGATGATGCTGTTATCCGTCGTTTACCAAGAAGGATCTATGTTGACTTACCTGATGCTGAAAATCGAAAGAAGATTCTAAGAATATTTCTTGCAAAAGAAAATCTGTACTCCGATTTTCAGTACGACGAACTTGCTAATTTAACCGAAGGATACTCTGGCAGTGATTTGAAGAACCTCTGTGTTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTAGAAGAAGAAAGGAAGAGAGACAATGATACTACAAATTCAGTATTAAGACCTCTTAATTTGGAAGATTTTGTGCAAGCAAAATCCAAGGTTGGTCCATCTGTTGCGTATGACGCAACAAGCATGAATGAGTTGAGGAAGTGGAACGAAATGTACGGTGAAGGCGGAAGTAGAGCAAAATCACCATTTGGATTCGGGAGCTGA	3120	0.4115	MYLRRIRCRDRRWALLLQPSKYFFRPKSSDHHCFQSLSPKTAVREYSSHGGVIKRDLLGSDSCGHVSSRYSFAGLNKRPSFCLRSSQIQAFSSESDGSSASENKQVHVNDGGDLDKGKNQLGKSGGDVKFSNTHAQLGEQDQEEWLHNEKLAVESKRRESPFLTRRDKFKNEFLRRITPWENINISWDTFPYHINEHTKSLLTECAASRLRHNKLASSFGTRLASSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDSSILAPYDIDDDQSSDYESDDDNAESGDEGGLECENEDDNDASNEEEWTSSAEAKSDASDNEDALASAEAALKKVKAAVQKLIPYNVDEFEKMVTGDESTESSNSDDAKSADKSGSQLRKGDRVKYIGPSIKFTNDDRIKLGKIPTSDGPTNAYTILPERVSILNNGQRGEVYDVNGDQAAVILDDNVEKANENEVENPNNDRPKASVYWINVKDIENDLDAQTQDCYIAVEALCEVLNSKQPLIVYFPDSSQWLHKSLPKSSRNEFFQKVEEMFDRLSGPVVLICGQNKVHSGTKEKEKFTMILPNIGRVAKLPLSLKHLTNGFKGGKTSEEDDINKLFSNVLSVHPPKEENLQVVFKKQLEEDRKIVISRSNLNELRKVLEEHQLSCVDLLQANTDGIILTKQKAEKVVGWAKNHYLSSCLLPSVKGERLCIPRESLEIAISRMKGMETMSRKPSQNLKSLAKDEFESNFVSSVVPPGEIGVKFDDIGALEDVKKALQELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRKKILRIFLAKENLYSDFQYDELANLTEGYSGSDLKNLCVAAAYRPVQELLEEERKRDNDTTNSVLRPLNLEDFVQAKSKVGPSVAYDATSMNELRKWNEMYGEGGSRAKSPFGFGS	1039

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g01453	1039	Coils	Coil	636	656	-	-
	Vifa6g01453	1039	Gene3D	-	918	1003	-	-
	Vifa6g01453	1039	MobiDBLite	consensus disorder prediction	357	382	-	-
	Vifa6g01453	1039	MobiDBLite	consensus disorder prediction	270	323	-	-
	Vifa6g01453	1039	Pfam	ATPase family associated with various cellular activities (AAA)	786	916	IPR003959	GO:0005524\|GO:0016887
	Vifa6g01453	1039	MobiDBLite	consensus disorder prediction	272	307	-	-
	Vifa6g01453	1039	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	168	1032	-	-
	Vifa6g01453	1039	MobiDBLite	consensus disorder prediction	357	381	-	-
	Vifa6g01453	1039	Gene3D	-	745	1021	IPR027417	-
	Vifa6g01453	1039	MobiDBLite	consensus disorder prediction	93	131	-	-
	Vifa6g01453	1039	Pfam	AAA+ lid domain	939	975	IPR041569	-
	Vifa6g01453	1039	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	745	1010	IPR027417	-
	Vifa6g01453	1039	MobiDBLite	consensus disorder prediction	309	323	-	-
	Vifa6g01453	1039	SMART	AAA_5	782	919	IPR003593	GO:0016887
	Vifa6g01453	1039	ProSitePatterns	AAA-protein family signature.	889	908	IPR003960	GO:0005524\|GO:0016887
	Vifa6g01453	1039	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	744	920	-	-
	Vifa6g01453	1039	MobiDBLite	consensus disorder prediction	108	122	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g01453	Vifa-Chr6	523400329	523412427	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g01453	780	981	Calmodulin-binding Proteins	AT3G56690	35.749	7.93e-33	135

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g01453	-		-	gmx:100802939	1607.04