Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01452 ATGGGCAAGTCAAGCAAGAAATCCGCCACCAAGGTTGATGCTGCTCCCGTTGTTGTTTCACCAGTCAAGTCTGGAAAGAAAGGCAAGAGGCAGCCTGAGGAAGAAATCAAGAAAGTGAGTGCTAAGAAGCAGAAGGTAGAGGAGGTTGTTGCTAAGCAAAAGAAGGAAGCTGTGGTTCAGAAAGTTAAGGAGGAAAGCAGTTCAGACGAGGATTCATCTGAATCTGAGGATGAGAAACCAGTTGTGAAAGCTGCCGCCCCTGTCAAGAAGGCACCTGTTAAGAACGGGAATGCTAAGAAAGCCAAGCCTGAGTCCAGTTCTTCAGATTCTGAGTCTGATGACGATGATTCTTCTGATGAGGATGATGCAAGTGCAAAGAAGACCGCACCAAAGAAAGCCGAGGTTGCTGTTAAACCTAAGCAGGCACCAAAGAAAGTGGAAAGTTCTGATGATTCAGATGAAGAATCTGATGATGAATCATCTGAAGATGAGAAACCTGTTCCAAAACCTGTTCCTGCTAAAAATGGTGGTGCCCCAGCAAAGAAAGCTGCCAGTTCTTCTGAAGAGGAGTCTGATGAAGATGAAGATTCTTCCTCTGATGAAGAAGCACCAAAAGCTAAGACTGTCCCTGCTGCTGTGAAGTCTGCTGCTGCAAAGAAGCCAGCTAAAAGCTCTGATTCTGATAGCTCAGAGGAGTCTGAAGATGATGAGGATACCAAGGCTACTGTAACTGCAGTGTCTAAGTCAGCTCCTCTTGCCAAAAAGACTGAGGATGATGATGAAGATAGCAGTGAAGAAGATGATAGCAGCTCTGATGAAGATCATAAAACTTCCAAAACTGCTAATGGGAACAAGAAGGCAGTGGCTGTTAAGAAAGAGGATAAGATGAATGTTGACAAGGATAGCAGTTCTGAGGAAAGTGACAGTGAAGCGGAGAGTGAGGATGAACCAGCCGAAACACCTCAAAAAAAGACTAAAGATGTGGAGATGATTGATGCTGACAAATCTTCAAAGAAAGCTCCTGCTACCCCAGCTACACCAAATGAAAATGGAGGTTCAAAGACCTTATTTGTTGGGAACCTGTCATTCAAAGTCGATCGACCTGACATTGAAAATTTCTTTCAAGAATGCGGAGAAGTTGTTGATGTCCGTCTTGCTTCAGACGAGGATGGGAGGTTCAAAGGCTTTGGACATGTTGAGTTTGCGACTGCAGAGGCAGCCCAACGTGCACTTGAGTTGAATGGGCAGGAATTGTTGCAAAGAGGTGTCCGACTTGATTTAGCTCGGGAAAGGGGAGCTTACACTCCAAATAGTAACAGCAACTTCTCTGGCCCCAACAGTGGTAAAGGCCAGTCCCAAACTGTATTTGTCAGGGGTTTTGATAAATCTCTTGGGGAGGATGAGATTAGAGCTAAGTTGGAGCAACATTTTGCTTCTTGCGGGAAGCCTTCAAGGGTGTCAATCCCAAAAGATTATGATTCTGGTTATGTGAAGGGGTTCGCATACATGGACTTCAAAGATTCTGAAAGCTTTAACAAAGCTCTAGAACTCCATGAAAGTGAACTTGATGGTTACTCGTTGTCAGTGGATGAAGCCAAAGCTAGAGATGCTCCAAGCAGTGGAGGTCGTTTTGACAGGGGTGGCCATGGAGGACGTGGTAGAGGTCGTTTTGACAGGGGTGGTCATGGAGGTCGATTTAGTGGCAGGAATGGCTCTGGAAGAAGTGGTGGAAGGGATGGTGGTAGAAGGGGTGGCCGTTTTGGATTCAATAAACCAAGTATTGTTTCAGGAGGAAAAAAGACCACTTTTGCCGATGACGAGTAG 1824 0.455 MGKSSKKSATKVDAAPVVVSPVKSGKKGKRQPEEEIKKVSAKKQKVEEVVAKQKKEAVVQKVKEESSSDEDSSESEDEKPVVKAAAPVKKAPVKNGNAKKAKPESSSSDSESDDDDSSDEDDASAKKTAPKKAEVAVKPKQAPKKVESSDDSDEESDDESSEDEKPVPKPVPAKNGGAPAKKAASSSEEESDEDEDSSSDEEAPKAKTVPAAVKSAAAKKPAKSSDSDSSEESEDDEDTKATVTAVSKSAPLAKKTEDDDEDSSEEDDSSSDEDHKTSKTANGNKKAVAVKKEDKMNVDKDSSSEESDSEAESEDEPAETPQKKTKDVEMIDADKSSKKAPATPATPNENGGSKTLFVGNLSFKVDRPDIENFFQECGEVVDVRLASDEDGRFKGFGHVEFATAEAAQRALELNGQELLQRGVRLDLARERGAYTPNSNSNFSGPNSGKGQSQTVFVRGFDKSLGEDEIRAKLEQHFASCGKPSRVSIPKDYDSGYVKGFAYMDFKDSESFNKALELHESELDGYSLSVDEAKARDAPSSGGRFDRGGHGGRGRGRFDRGGHGGRFSGRNGSGRSGGRDGGRRGGRFGFNKPSIVSGGKKTTFADDE 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01452 607 Gene3D - 291 439 IPR012677 -
Vifa6g01452 607 SUPERFAMILY RNA-binding domain, RBD 452 564 IPR035979 GO:0003676
Vifa6g01452 607 Coils Coil 515 535 - -
Vifa6g01452 607 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 453 534 IPR000504 GO:0003723
Vifa6g01452 607 SMART rrm1_1 355 426 IPR000504 GO:0003723
Vifa6g01452 607 SMART rrm1_1 454 530 IPR000504 GO:0003723
Vifa6g01452 607 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 116 498 - -
Vifa6g01452 607 MobiDBLite consensus disorder prediction 270 304 - -
Vifa6g01452 607 MobiDBLite consensus disorder prediction 533 563 - -
Vifa6g01452 607 SUPERFAMILY RNA-binding domain, RBD 346 450 IPR035979 GO:0003676
Vifa6g01452 607 Coils Coil 36 56 - -
Vifa6g01452 607 Gene3D - 444 590 IPR012677 -
Vifa6g01452 607 MobiDBLite consensus disorder prediction 533 607 - -
Vifa6g01452 607 MobiDBLite consensus disorder prediction 341 355 - -
Vifa6g01452 607 FunFam Nucleolin 2 329 438 - -
Vifa6g01452 607 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 430 IPR000504 GO:0003723
Vifa6g01452 607 CDD RRM1_NUCLs 355 431 IPR034349 -
Vifa6g01452 607 MobiDBLite consensus disorder prediction 121 150 - -
Vifa6g01452 607 MobiDBLite consensus disorder prediction 26 68 - -
Vifa6g01452 607 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 455 527 IPR000504 GO:0003723
Vifa6g01452 607 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Vifa6g01452 607 MobiDBLite consensus disorder prediction 316 336 - -
Vifa6g01452 607 MobiDBLite consensus disorder prediction 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01452 Vifa-Chr6 523360251 523364116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01452 340 528 Eukaryotic Initiation Factors Gene Family AT4G34110 30.052 1.27e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01452 K11294 - gmx:100779929 352.058