Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01426 ATGTCAAACCCCAAAGTTTTCTTCGATATGACCGTCGGCGGCCAAAACGCTGGACGCATCATCTTCGAGCTTTTTGCCGATGTCACTCCCAGAACCGCTGAGAATTTCCGTGCTCTCTGCACCGGCGAGAAAGGAGTCGGTCGTAGCGGCAAGCCACTCCACTTCAAGGGATCCTCCTTCCACCGTGTGATCCCTAACTTCATGTGCCAGGGAGGTGACTTCACCGCCGGAAACGGCACCGGAGGAGAATCGATCTACGGTTCCAAGTTCGCTGACGAGAACTTCATCAAGAAGCACACCGGTCCAGGAATCTTATCCATGGCGAACGCTGGACCCGGAACCAACGGATCTCAGTTCTTCATCTGCACTGCCAAGACTGACTGGCTCGACGGGAAACACGTCGTGTTCGGTCAGGTTGTCGATGGATTGAACGTTGTGAGGGATATTGAGAAGGTTGGATCTGGCTCTGGCAAGACCTCTAAGCCTGTTGTGATCGCCAATTGTGGACAACTGTAG 516 0.5368 MSNPKVFFDMTVGGQNAGRIIFELFADVTPRTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIKKHTGPGILSMANAGPGTNGSQFFICTAKTDWLDGKHVVFGQVVDGLNVVRDIEKVGSGSGKTSKPVVIANCGQL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01426 171 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 170 IPR002130 GO:0000413|GO:0003755
Vifa6g01426 171 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 171 - -
Vifa6g01426 171 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Vifa6g01426 171 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Vifa6g01426 171 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Vifa6g01426 171 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Vifa6g01426 171 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Vifa6g01426 171 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Vifa6g01426 171 SUPERFAMILY Cyclophilin-like 2 171 IPR029000 -
Vifa6g01426 171 CDD cyclophilin_ABH_like 4 169 - -
Vifa6g01426 171 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 169 IPR002130 GO:0000413|GO:0003755
Vifa6g01426 171 FunFam Peptidyl-prolyl cis-trans isomerase 1 171 - -
Vifa6g01426 171 Gene3D - 1 171 IPR029000 -
Vifa6g01426 171 PIRSF Peptidylpro_ismrse 1 171 IPR024936 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01426 Vifa-Chr6 519859864 519860379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01426 3 152 U-box Gene Family AT5G67530 47.097 9.61e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01426 K01802 - gmx:100777759 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01426 6 519859864 519860379 Vifa6g01426 6 519859864 519860379 ECH