Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01421 ATGAGTGAAAATCAAATGTGGAGTGATCTCACAAATTCTAAACACTTATGTGAGAGTAGCAAGCAAAAGTTAGATGTGAAGTCATTGAACCATAAAAAAAGACTTAATGAAGGAGAAATTCTTGTGAATAAAAAACGAAGTAGAGATGAGAATGATATAAATGGGAAAGGGAATGATGGAAAGTACCATGGTTCAGATTATGAAATGCATATTTTGACTGAAAGAGAAAGGAGAAAGAAAATGAGTGACATGTTCTCTGATCTTCATGCTTTGCTTCCTGAACTATCTCCTAAGGCTGATAAATCAACAATTGTGGATGGAGCAGTGGCGCAAATAAAAAATCTAGAAAAAATTATTGAAAAGTTAGAAAAGAAGAAGCAAGAAAAGCTGAAATATGTATCCCTATTTGGAAGTGAGTCATCATCTGTGATAAAAAAAACACATTGGCCTTCATATCCTAATTCAAAAGCATTATCACTATCAGCACCTCCACCACAACAAGTAGCTTTTCAAACATGGTCTTCTCCAAATGTTGTCACAAACATATGTGGTAGTCAAGCACAATTCTCCATATGTTCTACTAAGAAGCCAGGTCTTTTGACACGTATTGCTTTTGTGTTGGAGAAATATATGATTGATGTTGTATCTGCCAGCATTATATGCAATGGAAATGGAAATTTCTACATGATTCAAACACATGCAAAACAAGGTTCACATGACACAAATTTAATGGAGGAAATTTACAAGCAAGCTGCTAGTGAAATTATGATGTGGATCTCTTAA 783 0.3423 MSENQMWSDLTNSKHLCESSKQKLDVKSLNHKKRLNEGEILVNKKRSRDENDINGKGNDGKYHGSDYEMHILTERERRKKMSDMFSDLHALLPELSPKADKSTIVDGAVAQIKNLEKIIEKLEKKKQEKLKYVSLFGSESSSVIKKTHWPSYPNSKALSLSAPPPQQVAFQTWSSPNVVTNICGSQAQFSICSTKKPGLLTRIAFVLEKYMIDVVSASIICNGNGNFYMIQTHAKQGSHDTNLMEEIYKQAASEIMMWIS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01421 260 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 10 259 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vifa6g01421 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 131 IPR036638 GO:0046983
Vifa6g01421 260 CDD bHLH_AtbHLH_like 70 113 IPR045239 -
Vifa6g01421 260 Pfam Helix-loop-helix DNA-binding domain 69 116 IPR011598 GO:0046983
Vifa6g01421 260 MobiDBLite consensus disorder prediction 37 61 - -
Vifa6g01421 260 Coils Coil 105 132 - -
Vifa6g01421 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 115 IPR011598 GO:0046983
Vifa6g01421 260 Gene3D - 63 131 IPR036638 GO:0046983
Vifa6g01421 260 SMART finulus 71 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01421 Vifa-Chr6 517215855 517216844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01421 66 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 39.241 8.26e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g01421 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01421 - - psat:127104597 298.901