Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01420 ATGAATTTGATTGATGAGAAATTACTGCTCGAAGAGTTGAAGTCTGAAGTTGAACCGATGGATTGCACACCTGCTAGAAAGACACAGAAAGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGAGTAACATTTTAGACCCTGATAGACCCAAAAATGACAAAGCAACCATTCTAAGCGATACAGTTCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTAAAAGATGAATATACTATGCTAAATGAAGAATCTCGTGAGTTGTCTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAATTTGAATAACCAGTATCAGCTGCAACTCAGGACTATGTATCCATGGCCTGCAATGGATCATTCAGTAATGATGGCTCCCCCATCATATCCGTATCCAGTTCCAATGCCGGTACCTCCTCCTGGTTCAATTCCCATGCAGCCGTACCCCTACTATGCTAACCAACATCCTGCAATCATCCCTAACCCGTGTTCGACATATGTTCCGTTTTTAGCCCCCAACACAATTGTTGAACAGCAATCCACACAGTACGTATCCCCGCCTCTTCATCCAGGTAGCCGGTCCCACATATCAGGAAAACAAGAATCCAAAAACAAATCATCGAGGGAGAGCAGAGCTGAAAGAAATGCAGACTCTAATGATGTCGCCACAGAACTTGAGTTGAAGACTCCCGGGTCTTCCACAGATCAGGATTTATCATCCGCTCAGAAAAAATCTAGCAAGTCTCCTTCGAGGAAAGAAAACAGTTTCACAGAAGGTAGTTCGTTAGGCAAGTGTTCTTCGTCTCACAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGGAGCAGAAAGGCTAGTGAATAA 912 0.4265 MNLIDEKLLLEELKSEVEPMDCTPARKTQKADREKLRRDRLNEQFVELSNILDPDRPKNDKATILSDTVQLLKDLTSQVSKLKDEYTMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQLQLRTMYPWPAMDHSVMMAPPSYPYPVPMPVPPPGSIPMQPYPYYANQHPAIIPNPCSTYVPFLAPNTIVEQQSTQYVSPPLHPGSRSHISGKQESKNKSSRESRAERNADSNDVATELELKTPGSSTDQDLSSAQKKSSKSPSRKENSFTEGSSLGKCSSSHSVQDSSSSSVVGSRKASE 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01420 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 95 IPR036638 GO:0046983
Vifa6g01420 303 Pfam Helix-loop-helix DNA-binding domain 26 75 IPR011598 GO:0046983
Vifa6g01420 303 SMART finulus 31 81 IPR011598 GO:0046983
Vifa6g01420 303 Coils Coil 65 127 - -
Vifa6g01420 303 MobiDBLite consensus disorder prediction 268 303 - -
Vifa6g01420 303 MobiDBLite consensus disorder prediction 212 237 - -
Vifa6g01420 303 Gene3D - 25 108 IPR036638 GO:0046983
Vifa6g01420 303 PANTHER TRANSCRIPTION FACTOR BHLH121 13 301 IPR044579 GO:0003700|GO:0006879
Vifa6g01420 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 25 75 IPR011598 GO:0046983
Vifa6g01420 303 MobiDBLite consensus disorder prediction 197 303 - -
Vifa6g01420 303 MobiDBLite consensus disorder prediction 241 261 - -
Vifa6g01420 303 CDD bHLH_AtILR3_like 30 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01420 Vifa-Chr6 517201225 517203148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01420 9 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 63.200 1.26e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g01420 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01420 - - cam:101491902 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01420 6 517201225 517203148 Vifa6g01420 6 517201225 517203148 ECH