Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01412 ATGTCTGTTCAGACTTGCGAGAGAAATTGTATGGGGCCCAAAAACCCTTCAAGAGGGAAGTTTCAGGCTTCTATTGGAGCACATGAGATTTTCAACCCAGAGACATGGAAAGCAGCTTTAACAGAATTAGTGGCAACTGCCTCACTAATGTTCACCTTGTCTACCTCCATTATTGCATGCTTGGACTCGCATGAAGTTGATCCTAAGCTTAGTGTCCCCTTTGTAGTCTTCATCATAGTTTTCTTATTCCTAATTGTCACAGTTCCTCTATCTGGTGGCCACATGAGCCCTGTTTTCACAATAATAGCTACTCTAAAAGGTGTTACCACTCTTTCTCGTGCACTCCTTTACATCTTAGCACAATGCATTGGCTCGATAATTGGTTTCTATATACTCAAGTGCGTGATGGATCCAAAATTAATAAACACATACTCATTGGGAGGTTGTGCCATTGGTGGCAAAGGACTCAACTCTAGTATCAATGAGTATGATGCCTTGTTATTGGAATTCTCTTTCACATTTTTAGTACTCTTTTTGGGTGTTACATTGGCTTTTGACAAAAAGAGAGCAAAGAATTTAGGCTTGCCAATGGTATGTTTGGTGATAGCTGGGGCTATGGCATTGGCAGTATTTATGTCCATAACTGTAACTGGACGGGCCGGTTATGCGGGTGTTGGGCTTAACCCAGCAAGATGCTTAGGTGCTGCATTGGTTCATGGAGGTTCACTATGGAATGGGCTTTGGATTTTTTGGGTTGGGCCTATTTTGGCCTGCTTAATCTATTATAGTGTCTCTATCAACCTACCAAAGGACGGTTTGGCTTTGGTGGATGGAGAATATGATGTCTTAAAGTTGACTCTTGGTTCTAGTGGGACATTAGCTAAGGGTGACATTTCAAAGGAGAGTTTTTATTCCGCCTCTCATATATCTCAAAACATTTGA 942 0.4161 MSVQTCERNCMGPKNPSRGKFQASIGAHEIFNPETWKAALTELVATASLMFTLSTSIIACLDSHEVDPKLSVPFVVFIIVFLFLIVTVPLSGGHMSPVFTIIATLKGVTTLSRALLYILAQCIGSIIGFYILKCVMDPKLINTYSLGGCAIGGKGLNSSINEYDALLLEFSFTFLVLFLGVTLAFDKKRAKNLGLPMVCLVIAGAMALAVFMSITVTGRAGYAGVGLNPARCLGAALVHGGSLWNGLWIFWVGPILACLIYYSVSINLPKDGLALVDGEYDVLKLTLGSSGTLAKGDISKESFYSASHISQNI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01412 313 Gene3D Glycerol uptake facilitator protein. 23 268 IPR023271 -
Vifa6g01412 313 Pfam Major intrinsic protein 33 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g01412 313 SUPERFAMILY Aquaporin-like 33 260 IPR023271 -
Vifa6g01412 313 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g01412 313 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g01412 313 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g01412 313 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g01412 313 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g01412 313 PANTHER AQUAPORIN-LIKE 14 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01412 Vifa-Chr6 515945223 515947244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01412 14 260 Major Intrinsic Protein MIP AT3G53420 27.652 4.85e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01412 K09866 - gmx:100804160 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01412 6 515945223 515947244 Vifa6g01412 6 515945223 515947244 ECH