Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01407 ATGGAAGCAATCTTCGTTACCAAACCAAGTTCTCACTTCAAACCCAAACACTCTCTCCCTCCCAAAACCCCGTTTCTCTCCCACCACCAATCTCTCCCTTTCCGCCACAAACCCACCTACTTCCCCACCGTCACCGCCACAATTCAAAACCAGGAACAACAAGAAACAACTCCCAAAGAAATCGAAGATGAATCCTACGGCGAAGTCAAAAAAATCATCGGAAGCAAAGCACTGGAAGACTCCACCGGCATGGAGTATCTCATCGAATGGAAAGACGGCCACGAACCCTCCTGGGTCCCCGCCAACTTCATAGCAAAAGACGTTCTCTCCGAATACGAAAACCCCTGGTGGACCGCAGCAAGAAAGGCCAACGAAACCGAAATCAAAGCAATCCTCGAAGCCGACGACGGCCGCGACGTAAATGCGGTAGACGCCGACGGAAGAACCGCGCTCCTCTTCGTGGCGGGGCTCGGCTCTGAGCCTTGCGTTAAGCTTCTAGCGGAAGCCGGTGCGAATCTCGACCATCAAGACAACAGGGGCGGCTTATCCGCGCTGCACATGGCAGCCGGGTACGTAAGGCCTGAAGTCGCGAAGCTGCTTCTGGACCTCGGCGCGGATACGGAAATCAGCGACGATCGTGGAAGAACTGCTTTAGAGCTTGCAAGAGAGTTGTTGAAGGCAACGCCGAAGGGGAATCCGATGCAATTCGGGCGGAGAATGGGGTTAGAAGGTGTGGTTAGGGTTTTGGAAGGAGCAGTGTTTGAGTACTCTGAGGTGGAGGAGATTATGGAAAAAAGAGGGAAGGGTGAGAATTTGGAGTATTTGGTTCGTTGGAAAGATGAAAGTGCGAACGAGTGGGTGAAAGCGAAGTATGTGGCGGAGGATTTGGTGAAGGATTATGAGGCGGGTCTTGAGTATGCGGTGGCGGAAGCGGTGGTTGGTCGGAGAGTTGGGGATGATGGGAAGTATGAGTGTTTGGTGAAATGGGTTGATTTGGATGAGCCCAGTTGGGAGCCTGAGGAGAATGTTGATGCTGAGCTTGTTAAGATGTTTGAAGAGACTAATAATCAAGCCCGGCCCAGTGATGATAATGGGCTTTCTACGCTACCTTTGAGTCAGGATGGTCCAACTATTGCAAGTGCTTGA 1146 0.5192 MEAIFVTKPSSHFKPKHSLPPKTPFLSHHQSLPFRHKPTYFPTVTATIQNQEQQETTPKEIEDESYGEVKKIIGSKALEDSTGMEYLIEWKDGHEPSWVPANFIAKDVLSEYENPWWTAARKANETEIKAILEADDGRDVNAVDADGRTALLFVAGLGSEPCVKLLAEAGANLDHQDNRGGLSALHMAAGYVRPEVAKLLLDLGADTEISDDRGRTALELARELLKATPKGNPMQFGRRMGLEGVVRVLEGAVFEYSEVEEIMEKRGKGENLEYLVRWKDESANEWVKAKYVAEDLVKDYEAGLEYAVAEAVVGRRVGDDGKYECLVKWVDLDEPSWEPEENVDAELVKMFEETNNQARPSDDNGLSTLPLSQDGPTIASA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01407 381 ProSiteProfiles Chromo and chromo shadow domain profile. 257 286 IPR000953 -
Vifa6g01407 381 ProSiteProfiles Ankyrin repeat profile. 146 178 IPR002110 GO:0005515
Vifa6g01407 381 MobiDBLite consensus disorder prediction 352 381 - -
Vifa6g01407 381 CDD CD3_cpSRP43_like 304 352 IPR030300 -
Vifa6g01407 381 ProSiteProfiles Ankyrin repeat region circular profile. 146 178 - -
Vifa6g01407 381 SUPERFAMILY Chromo domain-like 255 302 IPR016197 -
Vifa6g01407 381 Pfam Chromo (CHRromatin Organisation MOdifier) domain 309 353 IPR023780 -
Vifa6g01407 381 SMART ANK_2a 111 142 IPR002110 GO:0005515
Vifa6g01407 381 SMART ANK_2a 180 209 IPR002110 GO:0005515
Vifa6g01407 381 SMART ANK_2a 146 175 IPR002110 GO:0005515
Vifa6g01407 381 ProSiteProfiles Ankyrin repeat region circular profile. 180 212 - -
Vifa6g01407 381 PANTHER MYOTROPHIN 114 278 - -
Vifa6g01407 381 Gene3D - 111 252 IPR036770 -
Vifa6g01407 381 ProSiteProfiles Chromo and chromo shadow domain profile. 307 363 IPR000953 -
Vifa6g01407 381 SMART chromo_7 306 356 IPR000953 -
Vifa6g01407 381 SMART chromo_7 255 305 IPR000953 -
Vifa6g01407 381 SMART chromo_7 65 117 IPR000953 -
Vifa6g01407 381 MobiDBLite consensus disorder prediction 354 381 - -
Vifa6g01407 381 Pfam Ankyrin repeats (many copies) 166 221 IPR002110 GO:0005515
Vifa6g01407 381 SUPERFAMILY Ankyrin repeat 111 223 IPR036770 -
Vifa6g01407 381 SUPERFAMILY Chromo domain-like 305 357 IPR016197 -
Vifa6g01407 381 ProSiteProfiles Ankyrin repeat profile. 180 212 IPR002110 GO:0005515
Vifa6g01407 381 Gene3D - 63 110 - -
Vifa6g01407 381 Gene3D - 253 302 - -
Vifa6g01407 381 SUPERFAMILY Chromo domain-like 62 116 IPR016197 -
Vifa6g01407 381 Gene3D - 303 355 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01407 134 221 CAMTA Transcription Factor Family AT5G09410 38.298 9.76e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01407 K12271 - gmx:100818382 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01407 6 513015938 513017083 Vifa6g01407 6 513015938 513017083 ECH