Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01398 ATGGCTTTCTTTCTATGCTTCTTCGTTCTCTTTCTCGCTTCCTCTGCAACCGCTTGTGATCGATGCTTACACCAATCTAAGGCTTCTTATTTCTCCAAACCCTCTTCTCTTTCATCTGGAGCATGTGGTTATGGCTCTTTAGCGCTTGACCTTAGTCGTGGACAATTTGCTGCTGGTGTTGCTTCACTCTTCTCTAATGGAGCTGGTTGCGGTGCTTGTTTTCAGGTAAGATGCAAGAACCAAGCTATATGCACAAAAGAAGGAACAAAAGTCCTTGGCATTCTTGACATTGAATACAAGAGAGTACCTTGTGAGTACAAAAAACAAAATTTGGCTGTTCGTGTTGAAGAATCAAGCAAGAAACCAGATTATTTAGCAATTAAATTTTTGTATCAAGGTGGCCAAACAGAGATAGTAGGTGCTGATGTGGCTCAGGTTGGATCTTCACAGTGGAATTATTTGAGTAGAAACCATGGTGCAGTGTGGGACACAAGTAGGGTTCCACAAGGGGGATTACAATTAAGATTTGTGGTTACATCAGGGTATGATGGAAAATGGATTTGGGCAAAGAAGGTTTTACCAGCTGATTGGAAAAATGGGGTGATATATGATACTGATGTTCAGATTACTGAAATTGCACAAGAGGGGGTGTCCAACATGTAA 663 0.4133 MAFFLCFFVLFLASSATACDRCLHQSKASYFSKPSSLSSGACGYGSLALDLSRGQFAAGVASLFSNGAGCGACFQVRCKNQAICTKEGTKVLGILDIEYKRVPCEYKKQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVGADVAQVGSSQWNYLSRNHGAVWDTSRVPQGGLQLRFVVTSGYDGKWIWAKKVLPADWKNGVIYDTDVQITEIAQEGVSNM 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01398 220 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 109 IPR007112 -
Vifa6g01398 220 Gene3D - 11 92 IPR036908 -
Vifa6g01398 220 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 123 205 IPR007117 -
Vifa6g01398 220 Pfam Expansin C-terminal domain 112 194 IPR007117 -
Vifa6g01398 220 SUPERFAMILY Barwin-like endoglucanases 8 107 IPR036908 -
Vifa6g01398 220 FunFam Expansin-like A2 106 210 - -
Vifa6g01398 220 SUPERFAMILY PHL pollen allergen 110 204 IPR036749 -
Vifa6g01398 220 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Vifa6g01398 220 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Vifa6g01398 220 PANTHER EXPANSIN-B3 12 91 - -
Vifa6g01398 220 Gene3D - 106 210 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01398 Vifa-Chr6 509879245 509880666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01398 3 216 Expansin Gene Family AT3G45960 54.400 3.89e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01398 - - gmx:100305884 350.132