Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01393 ATGGCTGAGAGAAAGCAAAGAGGGATACTCAGCCATAGTTTCATTTCTTTTGCTTATCTTGTTCCTAACCTCAAAAGGATGGACAAAGCTTATGTATTAGCTAGGTCTATTAAATACGTGAAAGACCTTAAAGATCGTTTGGAAGTTTTAGAAGAACAAGACACAAATGCAGAAGACGTAATTCGGGTTCAGAAGGAAAGTCAGAGAAAGACCAAGAACATAGTCAAGGACAATTCAACATACCAGGTTTATGACTCCATTTTACTTATTTCGACGTTATATTTGCTTCATCTTCACTATAATCCATCACCTTTTGAAATAGGGGGGAATGGTTATTAA 339 0.3628 MAERKQRGILSHSFISFAYLVPNLKRMDKAYVLARSIKYVKDLKDRLEVLEEQDTNAEDVIRVQKESQRKTKNIVKDNSTYQVYDSILLISTLYLLHLHYNPSPFEIGGNGY 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01393 112 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 53 IPR036638 GO:0046983
Vifa6g01393 112 Coils Coil 33 60 - -
Vifa6g01393 112 Gene3D - 1 72 IPR036638 GO:0046983
Vifa6g01393 112 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 43 IPR011598 GO:0046983
Vifa6g01393 112 PANTHER BHLH TRANSCRIPTION FACTOR 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01393 Vifa-Chr6 506539851 506540189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01393 1 79 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.741 4.37e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01393 - - gmx:100788128 72.7886