Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01392 ATGGCTGAGAGAAAGCAAAAAGGGATACTCAGCCATAGTTTCATTTCTTTTGCTTCTCTTGTTCCTAACCTCAAAAGGATGGACAAAGCTTATGTATTATCTAGGTCTATTAAATACGTCTACCCTTCATGCAAACCTCCTCTGTGCAATTCTGTATCACCATTGTTCATCTCCAACCCAATTCCTCACACTCACACCTTCACATTCCTTTCCTTGAGGACCCCACCTTACCTCATCTCCCCGCCTCTTCTCCACACCCCTTACCGGAGACCAAGACGCGCCACGGTGGTCACACGCGTCGTGGTAAACGCCAGTAGCTATGCTTTCGCGATTGCGCTTCCTCTTTCTCTCCTCGCTGTTACCATCTTCACTGCTCTCCGAATTGGTGAGAAGCTCGACCAAGTTTTCTACGAAGAGATGGCAGCGAATGAAGCTATCATGGAAGTTGACGAAGAGGTAGAAGATGACAACGATGATGAAGCGGAAACTTATTTACAAGAAGAACCTGTCCTTCCACGTGGCCGCGACAGACCAAAAAGAGAAGCTTAA 549 0.4699 MAERKQKGILSHSFISFASLVPNLKRMDKAYVLSRSIKYVYPSCKPPLCNSVSPLFISNPIPHTHTFTFLSLRTPPYLISPPLLHTPYRRPRRATVVTRVVVNASSYAFAIALPLSLLAVTIFTALRIGEKLDQVFYEEMAANEAIMEVDEEVEDDNDDEAETYLQEEPVLPRGRDRPKREA 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01392 182 MobiDBLite consensus disorder prediction 151 165 - -
Vifa6g01392 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 40 IPR036638 GO:0046983
Vifa6g01392 182 MobiDBLite consensus disorder prediction 151 182 - -
Vifa6g01392 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 43 IPR011598 GO:0046983
Vifa6g01392 182 PANTHER OS01G0940600 PROTEIN 70 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01392 Vifa-Chr6 506529214 506530298 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01392 1 40 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 45.000 2.31e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01392 - - gmx:100797970 99.7525