Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01387 ATGGATGCCACGCTCTCCGTTCTCAAGGATTACTTCGGGTTTATGAGTTTTCGACCTTATCGGCAAGAGGTTATTGAGAAAATTATTGAGAAAAGGGGTTGCTTGGTAGTTATGGCTACTGGTAGTGGCAAGTCATTGTGTTATCAAGTGCCTCCGTTGGTTGTGAAAAAGACTGGGATAGTTGTAAGCCCTTTAATATCATTGATGCAAGATCAGTTTATGACTCCTGAGAAGGCATGCACAATTCCTACCAGTTTCTGGTCTAACTTGCTAAAGGAAGGAATTAGTCTTTTTGTTGTTGATGAAGCACATTGTATATCAGAATGGGGGCATGACTTTAGGGTAGAATACAAGCAGTTAGACAAGTTACGTGGTGTTCTGTTAGATGTTCCTTATGTTGGTCTAACTGCAACGGCTACTGAAAAGGTTCGGTTTGACATCACCAATTCCTTGAAGATGAATAATCCTTACATTGTTGTTGGTTCATTTGATCGCCCAAATCATTTCTATGGTGTCAAGCAATTTAACCGAGGACAATATTTTATTGACGAGCTTGTTGAAGAAATTCCAAAAGAAGTTGCTAATGGTTCAACTATTATTTACTGCACAACAATCAAAGATGTAGAACAGATATATAAGTCAATAATGAACGTTGGTATAAATGATGGAATGTACCATGGCCAAATGGATGGAAAATCACGAGAGGAGTCTCACAGATTATTTGTTAGAGATGAAAAGCAAGTCATGGTGGCTACAATTGCCTTTGGAATGGGCATAGATAAACCTAATATAAGAAAAGTGATTCATTATGGCTGCCCTAAAAATCTAGAGTCCTACTACCAGGAAAGTGGGAGATGTGGTAGAGATGGTATAGCTTCTGCTTGTTGGCTTTACTACACAAGAAGTGACTTTTCAAAGGTTGATCGATGTGGAAACTGTGATAACTGCACGGTCTTGAGGCAACATCGTGACATGTCAAAAGAAGCCTTTCTTCTACTGGCTTGCATTCATTCATGCAAGGGAAGATGGGGCCTTAATATGTCGATTGACATCCTGCGCGGTTCTCGAGCAAAGAAAATAATGGAAGCTCAATATGACAAGCTTCCACTTCATGGACTTGGGAAAGCATACCAAGCAAATTGGTGGAAAGCACTTGGACATCAATTGATTTCTCTAGGTTATTTGAAGGAGTTTGTGACTGATGTGTACAGAAATGTAAGTGTCAGTTCAAAAGGAGAGAAATTTTTGGCCTCATGTAGACCAGACTATCAACCTCCTTTGGTTTTGCCATTGGTTTGTGAGCTCGCAGAAGAGGAAACTAGAAGCGCAGAAGAATTCAAAATTTTGGCCGCTTCAGAATCTGAAGGCTGA 1371 0.3997 MDATLSVLKDYFGFMSFRPYRQEVIEKIIEKRGCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQFMTPEKACTIPTSFWSNLLKEGISLFVVDEAHCISEWGHDFRVEYKQLDKLRGVLLDVPYVGLTATATEKVRFDITNSLKMNNPYIVVGSFDRPNHFYGVKQFNRGQYFIDELVEEIPKEVANGSTIIYCTTIKDVEQIYKSIMNVGINDGMYHGQMDGKSREESHRLFVRDEKQVMVATIAFGMGIDKPNIRKVIHYGCPKNLESYYQESGRCGRDGIASACWLYYTRSDFSKVDRCGNCDNCTVLRQHRDMSKEAFLLLACIHSCKGRWGLNMSIDILRGSRAKKIMEAQYDKLPLHGLGKAYQANWWKALGHQLISLGYLKEFVTDVYRNVSVSSKGEKFLASCRPDYQPPLVLPLVCELAEEETRSAEEFKILAASESEG 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01387 456 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 322 - -
Vifa6g01387 456 SMART RQC_2 324 428 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vifa6g01387 456 SMART ultradead3 13 175 IPR014001 -
Vifa6g01387 456 Pfam Helicase conserved C-terminal domain 183 289 IPR001650 -
Vifa6g01387 456 Gene3D - 164 299 IPR027417 -
Vifa6g01387 456 Gene3D - 319 444 IPR036388 -
Vifa6g01387 456 Pfam DEAD/DEAH box helicase 19 78 IPR011545 GO:0003676|GO:0005524
Vifa6g01387 456 FunFam ATP-dependent DNA helicase 319 443 - -
Vifa6g01387 456 Pfam RQC domain 321 417 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vifa6g01387 456 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 181 331 IPR001650 -
Vifa6g01387 456 SMART helicmild6 209 290 IPR001650 -
Vifa6g01387 456 NCBIfam RecQ family ATP-dependent DNA helicase 73 310 IPR004589 GO:0004386|GO:0006310
Vifa6g01387 456 CDD DEXHc_RecQ 5 164 - -
Vifa6g01387 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 305 IPR027417 -
Vifa6g01387 456 Gene3D - 75 163 IPR027417 -
Vifa6g01387 456 Gene3D - 1 74 IPR027417 -
Vifa6g01387 456 SUPERFAMILY "Winged helix" DNA-binding domain 319 418 IPR036390 -
Vifa6g01387 456 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 157 IPR014001 -
Vifa6g01387 456 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 96 105 IPR002464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01387 Vifa-Chr6 477783542 477785160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01387 89 303 Eukaryotic Initiation Factors Gene Family AT3G13920 22.973 2.69e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01387 K03654 - gmx:100797777 711.449