Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01383 ATGGAGATTGAAGCAACAAGTGGTGGTAGCAACAACAAAAACAAAAGATGCAACATGGATGAGAGTGAAGAAGAAGATGAAACATATTGTGGCATTACTACTAGAGGAAGTTTCTTAGCTTGGGAAGATCTAAGAGTTATTATACCAAATTTTGGTAAAGGACCAACCAAAAAGATTCTTAATGGCCTTCATGGTTTTGCTGAGCCTGGTAGAATCATGGCTATTATGGGCCCTTCTGGTTCTGGAAAATCAACTTTGCTTGATTCTCTTGCAGGTAGACTCTCCAAAAATGTTCTAATGACAGGAAATGTTCTTCTCAATGGCAAGAAAAAAAATCCAGGCTATGGTGGTTTTGTTGCATACGTAACACAAGAAGATGTGTTATTGGGAACTTTGACAGTAAGAGAAACTGTAACATATTCTGCGCATCTACGCCTTCCAACGTCAATGTCAAAAGAAGAAGTTAGCGGCATAATCGAAGGAACAATCATAGAAATGGGGCTTCAAGACTGTGCTGATAGGTTAATAGGTAACTGGCATTTGAGAGGTATAAGTGGTGGTGAAAAGAAAAGACTTAGCATTGCACTTGAAATTCTCACAAGGCCGCGTTTATTGTTTCTCGATGAACCAACCAGTGGATTAGATAGTGCTTCAGCGTTCTTCGTTGTTCAAACTCTTCGAAACGTTGCTCGCGATGGAAGGACTGTTATTTCTTCTATTCATCAACCTAGCAGTGAAGTCTTTGCTCTTTTTGATGATCTTTTCTTGCTTTCTGGCGGCGAAACTGTTTATTTTGGTGAAGCAAAATTGGCAATTGAGTTTTTCGCTGAGGCTGGTTTCCCTTGTCCGCGTAAAAGAAATCCTTCTGATCATTTCCTAAGATGTATCAATTCTGATTTTGACGTTGTAACTGCTACGCTAAAGGGATCTCAAAGGATTCATGATGTTCCGAATTCAGCATATCCTTTTTTGAACATGGCAACAGCACAGATTAAGGAAAGGTTAATAGAGAGATTTAGGCGTTCAAATTACGCGAGAAGAGTAAAAGACAAGATCCAAGAACTATCAACTCATGAAGGGCTTGAAAATGAGCCGAAATATGGAAGCCAAGCTAGTTGGTGGAAGCAACTCTCTACATTGACAAGGAGATCATTTGTGAACATGAGTAGAGATGTTGGTTATTATTGGTTGAGAATTATCATCTACATCATTGTATCTATATGTGTTGGAACTATCTATTTTGATATTGGCTATAGCTATACTTCAATCTTGGCTCGCGGCGCGTGTGGCGCATTTATATCAGGATTTATGACTTTCATGTCAATTGGAGGCTTTCCATGCTTTATTGAAGAAATGAAGGTATTTTATCGAGAAAGGCTTAATGGATATTATGGCGTAGCGGCATACATTTTATCGAACTTTCTATCATCATTCCCATTCTTGGTTTCTATTGCTGTTACTTCTAGCACCATCACATATAACATGGTGAAATTCAGGCCGGGGTTCATTCACTTTGCATTTTTCACTCTCAATATCTACTCATGCATCTCGGTAATCGAGAGTCTCATGATGGTTATAGCTTCACTTGTTCCAAATTTCCTCATGGGAATCATTACAGGAGCTGGAATCATTGGAATCATGATGATGACATCTGGATTCTTTAGGTTGCTATCTGATCTTCCAAAACCGGTTTGGCGCTATCCAATTTCATATATCAGTTACGGTGCATGGGCAATACAGGGTTCATACAAGAACGACTTACTTGGACTCGAGTTTGAACCACTAGTAGCCGGTGACCCGAAACTGACAGGAAGTTATGTGATAACACACATGTTAGGGATTGAACTAAACCATTCAAAGTGGTGGGACTTAGCAGCACTACTACTCATTCTCATATGTTACAGGATTCTATTCTTTATTGTTCTCAAGTTCAAGGAAAGAGCATCACCATTGTTTAAAAACCTTTACGCCAAAAGAACCATACAACAGCTTGAGAAAAGACCTTCATTCAGAAGAATGCCATCTTTTCCTTCATTGAGGCATCAACCACTTCACTCACTGTCTTCTCAAGAGGGTCTTGATTCTCCACTTCAATAG 2097 0.3929 MEIEATSGGSNNKNKRCNMDESEEEDETYCGITTRGSFLAWEDLRVIIPNFGKGPTKKILNGLHGFAEPGRIMAIMGPSGSGKSTLLDSLAGRLSKNVLMTGNVLLNGKKKNPGYGGFVAYVTQEDVLLGTLTVRETVTYSAHLRLPTSMSKEEVSGIIEGTIIEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTRPRLLFLDEPTSGLDSASAFFVVQTLRNVARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAIEFFAEAGFPCPRKRNPSDHFLRCINSDFDVVTATLKGSQRIHDVPNSAYPFLNMATAQIKERLIERFRRSNYARRVKDKIQELSTHEGLENEPKYGSQASWWKQLSTLTRRSFVNMSRDVGYYWLRIIIYIIVSICVGTIYFDIGYSYTSILARGACGAFISGFMTFMSIGGFPCFIEEMKVFYRERLNGYYGVAAYILSNFLSSFPFLVSIAVTSSTITYNMVKFRPGFIHFAFFTLNIYSCISVIESLMMVIASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGAWAIQGSYKNDLLGLEFEPLVAGDPKLTGSYVITHMLGIELNHSKWWDLAALLLILICYRILFFIVLKFKERASPLFKNLYAKRTIQQLEKRPSFRRMPSFPSLRHQPLHSLSSQEGLDSPLQ 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01383 698 MobiDBLite consensus disorder prediction 1 15 - -
Vifa6g01383 698 CDD ABCG_EPDR 36 266 - -
Vifa6g01383 698 Pfam ABC-2 type transporter 376 585 IPR013525 GO:0016020|GO:0140359
Vifa6g01383 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 272 IPR027417 -
Vifa6g01383 698 Gene3D - 40 278 IPR027417 -
Vifa6g01383 698 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 39 284 IPR003439 GO:0005524
Vifa6g01383 698 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 25 667 - -
Vifa6g01383 698 MobiDBLite consensus disorder prediction 1 26 - -
Vifa6g01383 698 SMART AAA_5 69 241 IPR003593 GO:0016887
Vifa6g01383 698 FunFam ABC transporter G family member 11 33 278 - -
Vifa6g01383 698 MobiDBLite consensus disorder prediction 681 698 - -
Vifa6g01383 698 ProSitePatterns ABC transporters family signature. 184 198 IPR017871 GO:0005524|GO:0016887
Vifa6g01383 698 MobiDBLite consensus disorder prediction 672 698 - -
Vifa6g01383 698 Pfam ABC transporter 67 212 IPR003439 GO:0005524
Vifa6g01383 698 Pfam ABC-2 type transporter 241 297 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01383 Vifa-Chr6 474841460 474846006 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01383 21 253 Calmodulin-binding Proteins AT2G36910 29.762 2.42e-12 68.6