Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01380 ATGGAGATAGAACTAGAGAGAGGGATGAGTTCAAAAAGAGGAATGCATCTAGTGTGGGAAAATTTGAGTGTTGTGATTCCAAATTTTGGGAATGGACACACAAAGAGGTTGCTTAATGGTTTGAGTGGATATGGTGAACCAAACAGAATCATGGCTATTATGGGTCCATCTGGTTCTGGAAAATCTACTCTTCTTGATGCTTTGGCAGGTAGACTGTCTAGAAATGTTATCATGTCTGGAAATGTGCTTTTAAATGGAAAGAAAAGAAGTCTAGACTATGGAGTTGTTGCTTATGTGACACAAGAAGACATAATGTTGGGAACACTAACAGTCAGAGAGACAATATCATACTCAGCAAATTTAAGGCTTCCAACAACAATGTCAAAACAAGAGATAAATGACATTGTTGAAGGAACAATTACTGAAATGGGTCTTCAAGATTGTGCTGATAGGGTTATAGGAAATTGGCACTTGAGAGGTATAAGTGGTGGTGAAAAGAAAAGACTAAGCATAGCACTTGAGATCTTAACAAGACCTTGTCTCTTGTTCCTTGATGAACCTACAAGTGGTTTGGACAGTGCTTCAGCTTATTTTGTTGCTCAAACTTTGAGAAACATAGCTCATGATGGGAAAACTGTTATTTCTTCTATTCATCAACCGAGTAGCGAGGTTTTTGCGTTGTTTGATGATCTTTTTCTGCTTTCTGGAGGTCAGACAATTTACTTTGGACCGGCTGAAAATGCAGTTGAGTTCTTTGCGAAAGCGGGATTTCCATGTCCGAGTAGAAGAAACCCTTCTGATCATTTCCTTCGTTGTATTAATTCAGACTTCGACACTGTCACGAGTACTATGATGGCCTCCCGGGGAACACATGAACAAGAAACATTAGCACCGTCAATGATGAACTTATCGATAGCGGCGACCAAAGCAATACTCACAGAGAAATACCGTTGGTCGGAATATGCGACTTGTGCAAGAGCAAGAATAAAACAAATGTCAAATTTTTTACAGGACGGGCGTGATTATGAAGGTAAAAGTAAGAGCCAAGCCAAATGGTGGAAGCAACTATCGACTTTGACTCAGAGATCTTTTGTGAACATGTCTAGAGATGTAGGGTACTATTGGATAAGGTTAACGATCTATGTTGCTTTATCTTTGTGTGTTGGAACAATCTTTTTTGAAGTTGGTTCAAGTTATAATGCCATTCTTGCAAGAGGAGCATGCGGCGCTTTTATATCAGGTTTCATGACATTCATGTCCATAGGAGGATTCCCATCATTCATAGAGGAAATGAAGGTTTTCAATAAAGAAAGGCTGAATGGATATTATGGAATCGCAGCCTACGTTCTGTCAAATTTTCTCTCTTCTTTTCCTTTTGTAGCAGTCATGTCCTTTGCTACCGGGACTATAACATATAATATGGTTAAGTTTCGTCCCGGGTTTTCACATCTTTTGTATATCTGTTTGGATCTTTTGGGATGTATTGCTATTGTGGAGAGCTCAATGATGATTATAGCTGCATTGGTTCCCAACTTTCTGATGGGATTGATAATTGGAGCAGGTTATATCGGTCTTATGATGATGACTGCTGGCTATTTCCGGCAGATCCGTGATCTTCCTAAATTCTTCTGGCGTTACCCAATTTCATACATCAATTATGGAGCATGGGGATTGCAGGGAGCATTCAAGAATGACATGATTGGAATGGAGTTTGGTCCATTGATAGCTGGTGGACCAAAAGTGAAAGGAGAAATAATCCTCACAACAATGCTTGGAATGAATGTTGATTATTCAAAATGGTGGGACCTAGCTGTGGTCATCTTCATCCTTGTGTTGCTTAGGGTTATTTTCTTTTTCATTCTCAAATTTAAGGAGAAAATTGTACCTTTCCTTCACAGTATCTACACAAAGCAAACACTGCAACGAATCATGAAGCGGCCTTCGTTCAGGAAAACTCCGTCGTTCGCTTCCAAGAGACACCAACCACTGCATCCATTGTCTTCTCAAGAGGGTCTCAACTCTCCATGTCATTAA 2034 0.3977 MEIELERGMSSKRGMHLVWENLSVVIPNFGNGHTKRLLNGLSGYGEPNRIMAIMGPSGSGKSTLLDALAGRLSRNVIMSGNVLLNGKKRSLDYGVVAYVTQEDIMLGTLTVRETISYSANLRLPTTMSKQEINDIVEGTITEMGLQDCADRVIGNWHLRGISGGEKKRLSIALEILTRPCLLFLDEPTSGLDSASAYFVAQTLRNIAHDGKTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGPAENAVEFFAKAGFPCPSRRNPSDHFLRCINSDFDTVTSTMMASRGTHEQETLAPSMMNLSIAATKAILTEKYRWSEYATCARARIKQMSNFLQDGRDYEGKSKSQAKWWKQLSTLTQRSFVNMSRDVGYYWIRLTIYVALSLCVGTIFFEVGSSYNAILARGACGAFISGFMTFMSIGGFPSFIEEMKVFNKERLNGYYGIAAYVLSNFLSSFPFVAVMSFATGTITYNMVKFRPGFSHLLYICLDLLGCIAIVESSMMIIAALVPNFLMGLIIGAGYIGLMMMTAGYFRQIRDLPKFFWRYPISYINYGAWGLQGAFKNDMIGMEFGPLIAGGPKVKGEIILTTMLGMNVDYSKWWDLAVVIFILVLLRVIFFFILKFKEKIVPFLHSIYTKQTLQRIMKRPSFRKTPSFASKRHQPLHPLSSQEGLNSPCH 677
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01380 677 MobiDBLite consensus disorder prediction 653 677 - -
Vifa6g01380 677 Pfam ABC transporter 40 189 IPR003439 GO:0005524
Vifa6g01380 677 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 17 261 IPR003439 GO:0005524
Vifa6g01380 677 SMART AAA_5 47 246 IPR003593 GO:0016887
Vifa6g01380 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 255 IPR027417 -
Vifa6g01380 677 Pfam ABC-2 type transporter 218 281 IPR043926 GO:0140359
Vifa6g01380 677 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 11 646 - -
Vifa6g01380 677 Pfam ABC-2 type transporter 355 563 IPR013525 GO:0016020|GO:0140359
Vifa6g01380 677 CDD ABCG_EPDR 14 243 - -
Vifa6g01380 677 MobiDBLite consensus disorder prediction 661 677 - -
Vifa6g01380 677 FunFam ABC transporter G family member 11 11 255 - -
Vifa6g01380 677 Gene3D - 6 256 IPR027417 -
Vifa6g01380 677 ProSitePatterns ABC transporters family signature. 161 175 IPR017871 GO:0005524|GO:0016887
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa6g01380 Vifa-Chr6 474097169 474102183 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01380 36 232 Calmodulin-binding Proteins AT2G36910 28.899 2.14e-10 62.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01380 K05681 - gmx:100806806 1106.66