Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01366 ATGACACTGGCCATAGGTGACGGGGCCAATGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGACGTCAAGAAGTGATGGCATCTGATTTTGCTATGGGGCAATTTCAGTTCTTGAAAAGATTACTTCTTGTTCATGGACACTGGAATTACCAGCGTGTCGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTGTTGATGTTATTTTGGTATATATTATGCACGGCTTTTTCTACAACTTCTGCATTAACAGATTGGAGTAGTGTATTCTATTCTGTGCTATACACATCTGTACCCACAATTTTTGTTGGTATTTTGGACAAAGACTTGAGTCATAGGACGCTTTTGCATATGGCAGCACCTCAACTTATTGCAGAAGATTGGGTAGCTTGCGACAGATGCCAGAAATGGAGGCTTCTACCTACTGGCTTAAAGCCAGAGCAACTTCCAGAGAAATGGTTGTGTGTCATGCTTAATTGGCTGCCTGGGATGAATTCTTGTGACTTCAGTGAGGATGAGACAACAAAGGCATTGTATGCTTCATATCAAGTGCCGATTTCTGAGGGTCAAAATAACTTGCAAACGCATGCCTCTGAAACTGCATTTGGAGTGAGCTCTGCTGATGCATCACAGTTTGGTCTAAATCACAAAAAGTCCAATTCTAACGTGTTGCTTGACCAAGGAAAGAAGAAACCTGTTTTTAAGGAAAAGATAATGTCAGGAAAGCTCAATGCTCAAGTATCAGGAAAAAATAGAAACTTGAATCAACATTCTACAGATTCTAAACCAATGAAGATGAAACATCCCAGCAGGTCTAACAACACGATAGAAGAGAGACATGTGTCCGAAGAGAGAGAAAAGCAAACAAGTGAAGGTACCAGAAAGTATATTAAGTTGAAACGTAAGACAGATGCTGATCAAACTAGTTCTGGAACTCCTAAGAAATCAAAAACTGAACATGTTCCCTATGCTGATAAACAACCGAATCCTGGCACGGGCCTTGGGAAGGTGGTTTTAAAACAAGAGGCTGTAATACAATTTGTTATTGACGCAATTCAAGCGGAAGCTTTTAATCCCAAGACTCTTTTTCTGATTGGCAGCTATACAATTGGAAAAGAAAGGCTATTCTTGGAGGTTGCTCGTTCGCTTCGCAAAAAGGTTTACGTAACTACAGCAAAATTACGCCTTTTAAACTGTTTAGAATTTACTGAGGAGGATATGCAGTGGTTTACTTCAAATGAGCATGAAAGCAATATTCATGTTGCCCCTATGTGGACACTCGCAAGCTTCAAAAGATTGAAGCACATATCAAGTCAATATGCGAGTCGGTTCAGTCTTATAGTTGCTTTCTCTCCTACTGGTTGGACATTTGGCAAAGTTAAAAAGAAGTCTCCTGGAAGAAGGTGGCAGCAGGGTACTGTTATAAGGTATGAAGTTCCTTACAGTGAGCATTCCAGCTTTACAGAACTCAAAGAGTTTGTAAATTTTGTGTCTCCCAATAACATTACACCAAGTGTGAATAATGATGGACCAGAATCTGCGGAAGCAATGGTTTCTCTCCTGTCAACTTGA 1605 0.4044 MTLAIGDGANDVSMIQMADVGVGICGQEGRQEVMASDFAMGQFQFLKRLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVLYTSVPTIFVGILDKDLSHRTLLHMAAPQLIAEDWVACDRCQKWRLLPTGLKPEQLPEKWLCVMLNWLPGMNSCDFSEDETTKALYASYQVPISEGQNNLQTHASETAFGVSSADASQFGLNHKKSNSNVLLDQGKKKPVFKEKIMSGKLNAQVSGKNRNLNQHSTDSKPMKMKHPSRSNNTIEERHVSEEREKQTSEGTRKYIKLKRKTDADQTSSGTPKKSKTEHVPYADKQPNPGTGLGKVVLKQEAVIQFVIDAIQAEAFNPKTLFLIGSYTIGKERLFLEVARSLRKKVYVTTAKLRLLNCLEFTEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYASRFSLIVAFSPTGWTFGKVKKKSPGRRWQQGTVIRYEVPYSEHSSFTELKEFVNFVSPNNITPSVNNDGPESAEAMVSLLST 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01366 534 MobiDBLite consensus disorder prediction 272 319 - -
Vifa6g01366 534 PANTHER CW-TYPE ZINC FINGER 125 337 - -
Vifa6g01366 534 Gene3D - 134 188 - -
Vifa6g01366 534 MobiDBLite consensus disorder prediction 252 341 - -
Vifa6g01366 534 ProSiteProfiles Zinc finger CW-type profile. 133 186 IPR011124 GO:0008270
Vifa6g01366 534 Pfam Phospholipid-translocating P-type ATPase C-terminal 33 129 IPR032630 -
Vifa6g01366 534 Pfam CW-type Zinc Finger 139 184 IPR011124 GO:0008270
Vifa6g01366 534 FunFam DNA cross-link repair 1A protein 349 495 - -
Vifa6g01366 534 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 119 IPR023298 -
Vifa6g01366 534 Pfam DNA repair metallo-beta-lactamase 416 520 IPR011084 -
Vifa6g01366 534 Gene3D - 1 50 IPR023214 -
Vifa6g01366 534 NCBIfam HAD-IC family P-type ATPase 1 91 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g01366 534 Gene3D - 349 495 - -
Vifa6g01366 534 MobiDBLite consensus disorder prediction 255 271 - -
Vifa6g01366 534 SUPERFAMILY HAD-like 2 60 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01366 Vifa-Chr6 469740217 469741901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01366 1 134 Primary Pumps ATPases AT5G04930 76.866 3.40e-64 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01366 K15340 - gmx:100816321 327.791