Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01365 ATGGAGTTGGTTAGGTTAGGCCAGTCATACTTCATGATTGAAGACATGGATATGTATGACCCTAGCTCTGGATCAAGGTTTCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGTTATGTATTTTCAGACAAGACAGGAACACTAACAGAAAACAAGATGGAATTCCGGAGGGCTAGTGTACATGGGAAGAATTATGGGAGCTCCTTGGTTACTACTGATGATAGTTCAGCAGCAACAGCTGTTATTCCGAAACGGAGATGGAAGCTCAAATCTGAAATTGCAGTTGATCCCCAACTAATGACCATGCTGCATAGAAACTCAAATAGAGATGAAAGAATAGCTGCTCATGAGTTTTTTCTTACATTGGCTGCTTGTAATACTGTGATTCCTATACTTACTGATGGTGGATTTTCTGGTTGTGGAACAAGTGAATCAAATGGATATGTAGAATGCATTGATTATCAGGGTGAATCCCCTGATGAACAAGCTCTAGTTTCTGCGGCCTCTGCATATGGATACACTCTTTTTGAGCGGACATCTGGACATATTGTTATTGACATCAACGGTGAGAAACTCAGGTTGGATGTGTTGGGCCTGCACGAATTTGACAGTGTGCGAAAGAGAATGTCTGTTGTTATTCGGTTTCCTGACAACGTGGTAAAGGTGTTTGTCAAAGGCGCTGATACATCAATGTTTAGCGTTTTGGCAAATGTCAGTGAGAGAAACAGTAGCTTATTGCATGCAACTCAGAGCCATCTAAGTGAATACTCATCACAAGGTTTGCGCACCCTTGTGGTTGCCACTAGAAGTCTATCTGATGCTGAACTTGAGGAGTGGCAAAGCAGGTATGGAGAGGCTAGCACCGCATTAACTGACAGAGCTACTAAACTACGTCAAACTGCAGCTCTTATAGAATGCAATTTAAATCTACTTGGAGCAACTGGAATTGAAGACAAGCTGCAAGAGGGTGTACCAGAAGCCATTGAGTCCCTACGACAAGCTGGAATCAAGGTCTGGGTTCTTACCGAGGAGGAATGCAGAAATCTTTTGGGTGATGCAATAGCCAAATATGCTGTGAGATGTTCAAGTAGAGGGCACCAGAATCTGAAGCATAAAACCAATGCTGAACATGGCGCACTTGATATTCCTAATTGTTCAAAGTCAATGAGTTTGCCCAAATGGAATCTAGGAAAGGAAGAAGGAGCTGATACTCCATTGGCACTTGTAATTGATGGGAATAGTTTGGTTTATATTTTGGAGAAGGAACGGGAGTCAGAGCTCTTTGACCTTGCAATTTCCTGTAAGGTTGTACTTTGTTGCCGTGTTGCACCCTTGCAGAAGGCTAGAATTGTTGATCTGATAAAGAGCCGCACAGATGATATGACACTGGCCATAGGTGACGGGGCCAATGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGACGTCAAGCAGTGATGGCATCAGATTTTGCTATGGGGCAATTTCAGTTCTTGAAAAGATTACTTCTTGTTCATGGACACTGGAATTACCAGTGTGTCGGTTATTTAGTTCTGTACAACTTCTACCGCAATGATGTCTTTGTGTTGATGTTATTTTGGTATATATTATGCACGGCTTTTTCTACAACTTCTGCATTAACAGATTGGAGTAGTGTATTCTATTCTGTGCTATACACATCTGTACCCACAATTTTTGTTGCACCTCAACTTATTGCAGAAGATTGGGTAGCTTGCGACAGATGCCAGAAATGGAGGCTTCTACCTACTGGCTTAAAGCCAGAGCAACTTCCAGAGAAATGGTTGTGTGTCATGCTTAATTGGCTGCCTGGGATGAATTCTTGTGACTTCAGTGAGGATGAGACAACAAAGGCATTGTATGCTTCATATCAAGTGCCGATTTCTGAGGGTCAAAATAACTTGCAAACGCATGCCTCTGAAACTGCATTTGGAGTGAGCTCTGCTGATGCATCACAGTTTGGTCTGAATCACAAAAAGTCCAATTCTAACGTGTTGCTTGACCAAGGAAAGAAGAAACCTGTTTTTAAGGAAAAGATAATGTCAGGAAAGCTCAATGCTCAAGTATCAGGAAAAAATAGAAACTTGAATCAACATTCTACAGATTCTAAACCAATGAAGATGAAACATCCCAGCAGGTCTAACAACACGATAGAAGAGAGACATGTGTCTGAAGAGAGAGAAAAGCAAACAAGTGAAGGTACCAGAAAGTATATTAAGTTGAAACGTAAGACAGATGCTGATCAAATTAGTTCTGGAACTCCTAAGAAATCAAAAACTGAACATGTTCCCTATGCTGATAAACAACCGAATCCTGGCACGGGCCTTGGGAAGGTGGTTCCAAAACAAGAGGCTGTAATACAATTTGTTATTGACGCAATTCAAGCGGAAGCTTTTAATCCCAAGACTCTTTTTCTGATTGGCAGCTATACAATTGGAAAAGAAAGGCTATTCTTGGAGGTTGCTCGTTCGCTTCGCAAAAAGGTTTACGTAACTACAGCAAAATTACGCCTTTTTAACTGTTTAGAATTTACTGAGGAGGATATGCAGTGGTTTACTTCAAATGAGCATGAAAGCAATATTCATGTTGCCCCTATGTGGACACTCGCAAGCTTCAAAAGATTGAAGCACATATCAAGTCAATATGCGAGTCGGTTCAGTCTTATAGTTGCTCTCTCTCCTACTGGTTGGACATTTGGCAAAGGTAAAAAGAAGTCTCCTGGAAGAAGGTGGCAGCAGGGTACTGTTATAAGGTATGAAGTTCCTTACAGTGAGCATTCCAGCTTTACAGAACTCAAAGAGTTTGTAAATTTTGTGTCTCCCAATAACATTACACCAAGTGTGAATAATGATGGACCAGAATCTGCGGAAGCAATGGTTTCTCTCCTGTCAACTTGA 2949 0.4127 MELVRLGQSYFMIEDMDMYDPSSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRRASVHGKNYGSSLVTTDDSSAATAVIPKRRWKLKSEIAVDPQLMTMLHRNSNRDERIAAHEFFLTLAACNTVIPILTDGGFSGCGTSESNGYVECIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDINGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVFVKGADTSMFSVLANVSERNSSLLHATQSHLSEYSSQGLRTLVVATRSLSDAELEEWQSRYGEASTALTDRATKLRQTAALIECNLNLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTEEECRNLLGDAIAKYAVRCSSRGHQNLKHKTNAEHGALDIPNCSKSMSLPKWNLGKEEGADTPLALVIDGNSLVYILEKERESELFDLAISCKVVLCCRVAPLQKARIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKRLLLVHGHWNYQCVGYLVLYNFYRNDVFVLMLFWYILCTAFSTTSALTDWSSVFYSVLYTSVPTIFVAPQLIAEDWVACDRCQKWRLLPTGLKPEQLPEKWLCVMLNWLPGMNSCDFSEDETTKALYASYQVPISEGQNNLQTHASETAFGVSSADASQFGLNHKKSNSNVLLDQGKKKPVFKEKIMSGKLNAQVSGKNRNLNQHSTDSKPMKMKHPSRSNNTIEERHVSEEREKQTSEGTRKYIKLKRKTDADQISSGTPKKSKTEHVPYADKQPNPGTGLGKVVPKQEAVIQFVIDAIQAEAFNPKTLFLIGSYTIGKERLFLEVARSLRKKVYVTTAKLRLFNCLEFTEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYASRFSLIVALSPTGWTFGKGKKKSPGRRWQQGTVIRYEVPYSEHSSFTELKEFVNFVSPNNITPSVNNDGPESAEAMVSLLST 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01365 982 ProSiteProfiles Zinc finger CW-type profile. 581 634 IPR011124 GO:0008270
Vifa6g01365 982 SFLD p-type atpase 29 520 IPR044492 -
Vifa6g01365 982 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 579 - -
Vifa6g01365 982 FunFam Phospholipid-transporting ATPase 157 292 - -
Vifa6g01365 982 NCBIfam phospholipid-translocating P-type ATPase 1 578 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa6g01365 982 Pfam DNA repair metallo-beta-lactamase 864 968 IPR011084 -
Vifa6g01365 982 NCBIfam HAD-IC family P-type ATPase 435 555 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g01365 982 PRINTS P-type cation-transporting ATPase superfamily signature 469 488 - -
Vifa6g01365 982 PRINTS P-type cation-transporting ATPase superfamily signature 45 59 - -
Vifa6g01365 982 MobiDBLite consensus disorder prediction 720 767 - -
Vifa6g01365 982 Pfam CW-type Zinc Finger 587 632 IPR011124 GO:0008270
Vifa6g01365 982 FunFam DNA cross-link repair 1A protein 796 943 - -
Vifa6g01365 982 Gene3D - 155 289 IPR023299 GO:0000166
Vifa6g01365 982 MobiDBLite consensus disorder prediction 700 793 - -
Vifa6g01365 982 SFLD C1.7: P-type atpase like 29 520 - -
Vifa6g01365 982 Gene3D - 796 943 - -
Vifa6g01365 982 Pfam Phospholipid-translocating P-type ATPase C-terminal 497 579 IPR032630 -
Vifa6g01365 982 FunFam Phospholipid-transporting ATPase 315 509 - -
Vifa6g01365 982 SUPERFAMILY HAD-like 32 514 IPR036412 -
Vifa6g01365 982 ProSitePatterns E1-E2 ATPases phosphorylation site. 47 53 IPR018303 -
Vifa6g01365 982 SUPERFAMILY Calcium ATPase, transmembrane domain M 27 579 IPR023298 -
Vifa6g01365 982 Pfam Cation transport ATPase (P-type) 162 236 - -
Vifa6g01365 982 Gene3D - 312 509 IPR023214 -
Vifa6g01365 982 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 51 328 IPR023299 GO:0000166
Vifa6g01365 982 Gene3D - 583 636 - -
Vifa6g01365 982 MobiDBLite consensus disorder prediction 703 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01365 Vifa-Chr6 469695156 469698322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01365 1 579 Primary Pumps ATPases AT5G04930 55.613 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01365 K14802 - gmx:100789830 955.281