Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01346 ATGATGAGGTTGCAGACATATGCAGGTCTTAGTTTAATTGGCACTTTGGCTGTAACCTATCATGCATTTAACAGTAGAGGTCAATTTTATCCGGCAATGGTTTATCTGGCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGCTCTAGTTATCATGTGTAGTATGTGGCAGTTAACTAAGAAGGTGTTTCTCGGCTCTCTTCGAGAAGCCGAGGTCGAGAGGCTTAACGAGCAAGCGTGGAGGGAGGTTATGGAAATTCTCTTTGCGATTACTATCTTTAGGCAGGACTTTTCTATTACTTTCCTTGCTATGGTTACAATGCTCTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGACTAGAATCGGTCAACCATTTACTTGCAACACACCAGGCATCCGTTTCGCTCTTCTTTTCTTTTGAGTACATGATACTAGCAACAACAACGGTGGCAATTTTTGTAAAATATATTTTCTATGTCAGTGATATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTTTTCACATTTTACTTGGATCTTGTTAAGGACTTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTGGCAATTTTCATAAACTACGGTGTTCCTTTGCACTTAATAAGGGAGCTGTACGAGACATTTAGGAACTTCAAAATCCGTGTTGCAGATTACTTACGTTATCGTAAGATCACTTCTAACATGAATGACCGGTTTCCAGATGCTACCCCTGAAGAGCTTATTGCAAGTGATGCAACCTGCATCATCTGTCGCGAAGAGATGGTTACTGCAAAGAAACTTATATGTGGTCATCTTTTTCATGTTCACTGCCTCCGATCATGGCTGGAGAGGCAGCATACTTGCCCTACCTGCAGAGCACTGGTTGTCCCAACGGAAAATGGTAGTACTGCTGCTGGTGGGCAGCAAAGGTCACAGTCAGATGCTCATCTGCACGGGGCAGGCACTGGAAGCTCAGCTCAAAATGAGGTTGGCAATGGGGTGGCATGTGATAGTTTGAGTCGGCATCAAGCAAGACTTCAAGCTGCTGCATCAGCTGCTTCAATATATGAGAAGTCTTATGTTTACCCTTCTCCAACTTTTGCATGTCCCCCTGGTTACACTCTTCATCCCATGGTTCCAAGATCTGTGGTTGAATCGCCTAATGCAGAACTTGATGGAGAACGAGCTCAAAGGAAACTCCAGAGTGAGAAAGCAAATGTTGACAAAAGTGTAGGCGAGGAGAGCACATCATTGTCAGATAGCAAAGGCAAACAAATTGCTGCCTCTTCATCTGTATCAAGTCATGATGAGAGTCCAGACATCAGAGCATAA 1347 0.4328 MMRLQTYAGLSLIGTLAVTYHAFNSRGQFYPAMVYLATSKISLVLLLNMALVIMCSMWQLTKKVFLGSLREAEVERLNEQAWREVMEILFAITIFRQDFSITFLAMVTMLLLIKALHWLAQKRLESVNHLLATHQASVSLFFSFEYMILATTTVAIFVKYIFYVSDMLMEGQWEKKPVFTFYLDLVKDLLHLSMYMCFFLAIFINYGVPLHLIRELYETFRNFKIRVADYLRYRKITSNMNDRFPDATPEELIASDATCIICREEMVTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPTENGSTAAGGQQRSQSDAHLHGAGTGSSAQNEVGNGVACDSLSRHQARLQAAASAASIYEKSYVYPSPTFACPPGYTLHPMVPRSVVESPNAELDGERAQRKLQSEKANVDKSVGEESTSLSDSKGKQIAASSSVSSHDESPDIRA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01346 448 ProSiteProfiles Zinc finger RING-type profile. 259 297 IPR001841 -
Vifa6g01346 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 306 IPR013083 -
Vifa6g01346 448 MobiDBLite consensus disorder prediction 395 448 - -
Vifa6g01346 448 SMART ring_2 259 296 IPR001841 -
Vifa6g01346 448 MobiDBLite consensus disorder prediction 307 333 - -
Vifa6g01346 448 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 231 306 - -
Vifa6g01346 448 CDD RING-H2_synoviolin 256 297 - -
Vifa6g01346 448 MobiDBLite consensus disorder prediction 396 415 - -
Vifa6g01346 448 PANTHER RING ZINC FINGER PROTEIN 1 366 - -
Vifa6g01346 448 Pfam Ring finger domain 258 297 IPR001841 -
Vifa6g01346 448 MobiDBLite consensus disorder prediction 416 441 - -
Vifa6g01346 448 SUPERFAMILY RING/U-box 239 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01346 Vifa-Chr6 465225320 465229459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01346 1 418 C3H Transcription Factor Family AT3G16090 66.013 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01346 K10601 - gmx:100816441 626.706