Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01344 ATGGCTTACATGTGTGCAGACAGTGGTAACCTAATGGCCATCGCTCAACAAGTCATCAACCAAAAACAGCAACAAGAACAACATGACCAACAACAACATCATCAACATCATCAAAATCTCTTAGGTACTATCACTAACCCATGGAATCCCAACAACAACAACAACAACAACTCTGTTTCATCACTTCCACCTCTCTCCTTCCCACCAACCGACTTCACCGACCCATTTCAAGTCGGGTCGGGTCCCGACAACCCCGATCCCACTTTCCACTTCCCTCCCCTCCACCCCACCTTCCGTTTCTCCGATTTCGATTCCGAAGACTGGATGGACACTCTAATGGCCGCCGCCGCCGATGACACCCCTAACACCCACACAGACTTTCCTCTCAACCCGTTTTCGTCCTGCCCGACCCGACTCTCTCCACCCTCGGATCTCCTCTTACCCGCCACCCTTCCACTCCAAAACCAGACCCCAACCCATCCTCACAACAAAAACGACACCACCGAAACGACATCCTCATTACCCTCGTCCACAAACCCGCTTCTCAAATCACTAACCCAATGCGCACGCCTCATCGAAACCGAACCAAATCAAGCCGTGGAAACCCTAAACCATCTCAAAAAATCAATTTCACAAAACGGAAACCCAACTCAGAGAGTTTCATTCTATTTCTCACAAGCTTTAACCAACAAAATCAACACACACTCGCAACTAGCTTCTTCACTTTCTTCTATTTCTTCAACTACATGGGAAGAGTTAACGCTTTCTTACAAAGCCCTAAACGATGCATGCCCTTATTCGAAGTTCGCACATTTAACTGCAAATCAAGCAATTCTCGAAGCAACCGAAGGTTTCAACAATATTCACATAGTTGATTTTGGAATAGTTCAAGGGATTCAATGGGCTGCACTTTTACAAGCCTTCGCAACTCGTTCTTCTGGAAAACCTAACAGTGTAAGAATTTCTGGTATACCTGCTATGGCTCTTGGGATTTCGCACGTCTCTTCAATTTCTGCTACTGGTAATCGTTTATCTGAGTTTGCCAAACTTCTAGAGTTGAATTTTGAGTTTACGCCCATTACTACTACGCCGATTCAGATGCTTAATGAGTCTAGCTTTTGTATTCAACCCAATGAGGCTTTGGCTGTTAATTTCATGCTTCAGTTGTATAATCTTTTGGGTGAGACTTCGGATTCCGTTGAAACAGCGCTTCGTTTGGCCAAGTCTTTGAATCCCAAGATTGTTACTCTTGGTGAATATGAAGCTAGCTTGACGACGCGTGTTGGTTTTGTGAAACGGGTTGAAACCGCTTTTAATTATTTTGCTGCTTTTTTCGAGTCTTTGGAGCCAAACATGGAGGTGGATTCTCCGGAGAGGTTTCAAGTGGAGAGTCTTTTGCTTGGTAGGAGAATTGATGGTGTGATTGGTGTGAGGGAGAGGATGGAGGATAAAGAACAGTGGAAAGTTTTGATGGAAAGTTGTGGCTTTGAATCTGTTAGTTTGAGTCATTATGCAATTAGTCAAGCTAAGATACTTTTATGGAATTATAGTTATAGTTCTTTGTATTCTCTTGTTGAATCTCAACCTGGGTTCTTGTCTTTGGCTTGGAAAGATGTTCCTCTCTTGACTGTTTCTTCTTGGCGTTGA 1647 0.4408 MAYMCADSGNLMAIAQQVINQKQQQEQHDQQQHHQHHQNLLGTITNPWNPNNNNNNNSVSSLPPLSFPPTDFTDPFQVGSGPDNPDPTFHFPPLHPTFRFSDFDSEDWMDTLMAAAADDTPNTHTDFPLNPFSSCPTRLSPPSDLLLPATLPLQNQTPTHPHNKNDTTETTSSLPSSTNPLLKSLTQCARLIETEPNQAVETLNHLKKSISQNGNPTQRVSFYFSQALTNKINTHSQLASSLSSISSTTWEELTLSYKALNDACPYSKFAHLTANQAILEATEGFNNIHIVDFGIVQGIQWAALLQAFATRSSGKPNSVRISGIPAMALGISHVSSISATGNRLSEFAKLLELNFEFTPITTTPIQMLNESSFCIQPNEALAVNFMLQLYNLLGETSDSVETALRLAKSLNPKIVTLGEYEASLTTRVGFVKRVETAFNYFAAFFESLEPNMEVDSPERFQVESLLLGRRIDGVIGVRERMEDKEQWKVLMESCGFESVSLSHYAISQAKILLWNYSYSSLYSLVESQPGFLSLAWKDVPLLTVSSWR 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01344 548 Pfam GRAS domain family 182 548 IPR005202 -
Vifa6g01344 548 MobiDBLite consensus disorder prediction 20 66 - -
Vifa6g01344 548 ProSiteProfiles GRAS family profile. 172 548 IPR005202 -
Vifa6g01344 548 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 168 543 IPR005202 -
Vifa6g01344 548 MobiDBLite consensus disorder prediction 36 66 - -
Vifa6g01344 548 MobiDBLite consensus disorder prediction 150 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01344 Vifa-Chr6 464976411 464978057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01344 1 548 GRAS Transcription Factor Family AT5G66770 54.333 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa6g01344 GRAS 6.7e-103 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01344 - - adu:107477343 610.912