Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01342 ATGGGAACACGGCCGCAGCAATCGCGTGTAGATGAAGAGGACGATGAACTGCTCGGTTGTGGAACGACGATTTCCGGCCAATCAGGCTCCACAAGCCGGAGTGCTGGGTTGGGGACCACCGCTGGTGATAGCGCTGCTCTCAAATTGAATCACCTTGACATACACGACGATGATGCTGCATCACAGGGAGTAGTTGCCAGAAGCAAGAAGAAAAAGAGAGGCCAACGAGCTGTTGGGGGTGATAAGAGTGGAAGAGGGCTTCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGTAGAGGAAGAACAACTTACAATGAGGTGGCGGATGAGCTTGTGGCTGAGTTTTCTGATCCAAGCAATAGTGTCTTGACCCCTGATCAGCAACAATATGATGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCTATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACCAGTCAGAGTGATATTGAAGAACTAAAGACAGAGCGTCTTGGGCGCAGGAATAGAATTGAAAGGAAAACAGCCTATCTGAAGGAGCTTGAGGAGCAATTTGTAGGTCTTCAGAAACTTATCCAACGAAATGAGCAAATATGTAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCGTTACCTTTTATTCTCGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAACAGTTCTCCTTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAATTTTTGTGAGAGTGAGAGACCACAGAGTGACAATGTCATACACAATGTTGTGAATGGAGGCGAAGGTTCTAGCATGTCGGGCATGTATCAGTCGCATGTTCCTCCTTCAGTTTCAAACATGTCAATTAGGCTTCCCACATCACCTCCACTCCCTGGAATATTAAAGGCGAGAGTTAAGCAAGAGCATTGA 1011 0.453 MGTRPQQSRVDEEDDELLGCGTTISGQSGSTSRSAGLGTTAGDSAALKLNHLDIHDDDAASQGVVARSKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESRGRTTYNEVADELVAEFSDPSNSVLTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQSDIEELKTERLGRRNRIERKTAYLKELEEQFVGLQKLIQRNEQICSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSSPFELHDDNYVLKAMNFCESERPQSDNVIHNVVNGGEGSSMSGMYQSHVPPSVSNMSIRLPTSPPLPGILKARVKQEH 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01342 336 FunFam Transcription factor-like protein DPB 77 170 - -
Vifa6g01342 336 SMART E2F_TDP_2 82 165 IPR003316 GO:0005667|GO:0006355
Vifa6g01342 336 SMART DP_2 172 334 IPR014889 -
Vifa6g01342 336 Coils Coil 195 215 - -
Vifa6g01342 336 SUPERFAMILY "Winged helix" DNA-binding domain 85 166 IPR036390 -
Vifa6g01342 336 MobiDBLite consensus disorder prediction 60 85 - -
Vifa6g01342 336 PIRSF Txn_factor_DP 14 336 IPR015648 GO:0005667|GO:0051726
Vifa6g01342 336 PANTHER TRANSCRIPTION FACTOR DP 39 288 IPR015648 GO:0005667|GO:0051726
Vifa6g01342 336 MobiDBLite consensus disorder prediction 1 38 - -
Vifa6g01342 336 SUPERFAMILY E2F-DP heterodimerization region 172 279 IPR037241 -
Vifa6g01342 336 Pfam Transcription factor DP 173 280 IPR014889 -
Vifa6g01342 336 Gene3D - 77 170 IPR036388 -
Vifa6g01342 336 Pfam E2F/DP family winged-helix DNA-binding domain 85 165 IPR003316 GO:0005667|GO:0006355
Vifa6g01342 336 CDD DP_DD 170 273 IPR014889 -
Vifa6g01342 336 FunFam Transcription factor-like protein DPB 171 297 - -
Vifa6g01342 336 Gene3D Transcription factor DP 171 304 IPR038168 -
Vifa6g01342 336 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01342 Vifa-Chr6 464677793 464681363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01342 83 273 E2F-DP Transcription Factor Family AT5G02470 54.688 1.94e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vifa6g01342 DP 5.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01342 K04683 - zju:107414839 515.768