Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01341 ATGGGAACACGGCCGCAGCAATCGCGTGTAGATGAAGAGGACGATGAACTGCTCGGTTGTGGAACGACGATTTCCGGCCAATCAGGCTCCACAAGCCGGAGTGCTGGGTTGGGGACCACCGCTGGTGATAGCGCTGCTCTCAAATTGAATCACCTTGACATACACGACGATGATGCTGCATCACAGGGAGTAGTTGCAAGCAAGAAGAAAAAGAGAGGCCAACGAGCTGTTGGGGGTGATAAGAGTGGAAGAGGGCTTCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGTAGAGGAAGAACAACTTACAATGAGGTGGCGGATGAGCTTGTGGCTGAGTTTTCTGATCCAAGCAATAGTGTCTTGACCCCTGATCAGCAACAATATGATGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCTATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACCAGTCAGAGTGATATTGAAGAACTAAAGACAGAGCGTCTTGGGCGCAGGAATAGAATTGAAAGGAAAACAGCCTATCTGAAGGAGCTTGAGGAGCAATTTGTAGGTCTTCAGAAACTTATCCAACGAAATGAGCAAATATGTAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCGTTACCTTTTATTCTCGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAACAGTTCTCCTTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAATTTTTGTGAGAGTGAGAGACCACAGAGTGACAATGTCATACACAATGTTGTGAATGGAGGCGAAGGTTCTAGCATGTCGGGCATGTATCAGTCGCATGTTCCTCCTTCAGTTTCAAACATGTCAATTAGGCTTCCCACATCACCTCCACTCCCTGGAATATTAAAGGCGAGAGTTAAGCAAGAGCATTGA 1008 0.4524 MGTRPQQSRVDEEDDELLGCGTTISGQSGSTSRSAGLGTTAGDSAALKLNHLDIHDDDAASQGVVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESRGRTTYNEVADELVAEFSDPSNSVLTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQSDIEELKTERLGRRNRIERKTAYLKELEEQFVGLQKLIQRNEQICSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSSPFELHDDNYVLKAMNFCESERPQSDNVIHNVVNGGEGSSMSGMYQSHVPPSVSNMSIRLPTSPPLPGILKARVKQEH 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01341 335 Pfam E2F/DP family winged-helix DNA-binding domain 84 164 IPR003316 GO:0005667|GO:0006355
Vifa6g01341 335 Coils Coil 194 214 - -
Vifa6g01341 335 SUPERFAMILY E2F-DP heterodimerization region 171 278 IPR037241 -
Vifa6g01341 335 SMART E2F_TDP_2 81 164 IPR003316 GO:0005667|GO:0006355
Vifa6g01341 335 Gene3D Transcription factor DP 170 303 IPR038168 -
Vifa6g01341 335 SUPERFAMILY "Winged helix" DNA-binding domain 84 165 IPR036390 -
Vifa6g01341 335 Pfam Transcription factor DP 172 279 IPR014889 -
Vifa6g01341 335 PIRSF Txn_factor_DP 14 335 IPR015648 GO:0005667|GO:0051726
Vifa6g01341 335 FunFam Transcription factor-like protein DPB 76 169 - -
Vifa6g01341 335 CDD DP_DD 169 272 IPR014889 -
Vifa6g01341 335 MobiDBLite consensus disorder prediction 60 84 - -
Vifa6g01341 335 PANTHER TRANSCRIPTION FACTOR DP 39 287 IPR015648 GO:0005667|GO:0051726
Vifa6g01341 335 MobiDBLite consensus disorder prediction 1 38 - -
Vifa6g01341 335 FunFam Transcription factor-like protein DPB 170 296 - -
Vifa6g01341 335 Gene3D - 76 169 IPR036388 -
Vifa6g01341 335 SMART DP_2 171 333 IPR014889 -
Vifa6g01341 335 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01341 Vifa-Chr6 464677793 464681363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01341 54 272 E2F-DP Transcription Factor Family AT5G02470 51.818 1.51e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vifa6g01341 DP 5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01341 K04683 - jre:108988357 515.383