Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01340 ATGGGAATTCGACCTCAGCAATCTGTAGACGAAGACGACGAGGATCTTCTAGGTTGCGGAACTACGGTTTCCGGCCAATCAGGCTCCACCAGCAGGAGTGCCGGTATGCCGTCTACCGGGACTGCCGCTGGTGACAACGCTGCTCTCAAATTAAACCATCTTGATATACAGGATGATGATGCTGCATCACAGGGAGTAGTTGCCAAGAAGAAAAAGAGAGGTCAACAAAGGGCTGTTGGAGGTGATAAAAGTGGAAGAGGGCTTCGCCAATTTAGCATGAAAGTTTGTGAGAAAGTAGAAAGTAAGGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAGTTTGCTGATCCGATCAATAGTGTTTTGTCTCCTGATAAGCAAACATACGATGAGAAAAACATTCGGCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCAATGGACATTATCTCTAAGGATAAAAAGGAAATACAATGGAGGGGTCTTCCTCGTACTAGTCTGAATGATATTGAAGAGCTAAAGACAGAGCGTCTTGGGCTCAGGACTAGAATTGAAAGGAAATCATCCTATCTGCAGGAGCTAGAGGAACAATTTGTAGGTCTTCAAAACCTTATTCAACGAAATGAACAGTTATATAGCTCTGGAAATCCTCCCAGCGGAGGTGTATCTTTACCCTTTATTCTGGTACAGACACGACCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTTAATAGTACTCCCTTTGAGTTGCATGACGACAATTATGTGCTAAAGGCAATGGAATTTGGTGATAGACCACAGAGTGATACTGTTACACACAATGTTACAGATGCGGGTGAAGGTTCTAGCATGTCAGGCATGCAGTCACAGGTTCCTCCTTCAGTTTCAAGCGTGTCAACTAGACCGCCCACATCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAACATTGA 1005 0.4408 MGIRPQQSVDEDDEDLLGCGTTVSGQSGSTSRSAGMPSTGTAAGDNAALKLNHLDIQDDDAASQGVVAKKKKRGQQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINSVLSPDKQTYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLNDIEELKTERLGLRTRIERKSSYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMEFGDRPQSDTVTHNVTDAGEGSSMSGMQSQVPPSVSSVSTRPPTSPPLPGILKARVKQEH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01340 334 SMART DP_2 173 332 IPR014889 -
Vifa6g01340 334 CDD DP_DD 171 274 IPR014889 -
Vifa6g01340 334 PIRSF Txn_factor_DP 10 334 IPR015648 GO:0005667|GO:0051726
Vifa6g01340 334 MobiDBLite consensus disorder prediction 62 86 - -
Vifa6g01340 334 PANTHER TRANSCRIPTION FACTOR DP 37 320 IPR015648 GO:0005667|GO:0051726
Vifa6g01340 334 Gene3D Transcription factor DP 172 315 IPR038168 -
Vifa6g01340 334 MobiDBLite consensus disorder prediction 20 40 - -
Vifa6g01340 334 SUPERFAMILY E2F-DP heterodimerization region 172 287 IPR037241 -
Vifa6g01340 334 MobiDBLite consensus disorder prediction 281 312 - -
Vifa6g01340 334 MobiDBLite consensus disorder prediction 1 44 - -
Vifa6g01340 334 FunFam Transcription factor-like protein DPB 172 296 - -
Vifa6g01340 334 Gene3D - 78 171 IPR036388 -
Vifa6g01340 334 Coils Coil 196 216 - -
Vifa6g01340 334 SUPERFAMILY "Winged helix" DNA-binding domain 86 167 IPR036390 -
Vifa6g01340 334 FunFam Transcription factor-like protein DPB 78 171 - -
Vifa6g01340 334 Pfam Transcription factor DP 174 288 IPR014889 -
Vifa6g01340 334 Pfam E2F/DP family winged-helix DNA-binding domain 86 166 IPR003316 GO:0005667|GO:0006355
Vifa6g01340 334 SMART E2F_TDP_2 83 166 IPR003316 GO:0005667|GO:0006355
Vifa6g01340 334 MobiDBLite consensus disorder prediction 280 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01340 Vifa-Chr6 464660600 464663529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01340 71 275 E2F-DP Transcription Factor Family AT5G02470 52.913 3.57e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vifa6g01340 DP 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01340 K04683 - qsu:112000390 486.108