Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01339 ATGGGAATTCGACCTCAGCAATCTGTAGACGAAGACGACGAGGATCTTCTAGGTTGCGGAACTACGGTTTCCGGCCAATCAGGCTCCACCAGCAGGAGTGCCGGTATGCCGTCTACCGGGACTGCCGCTGGTGACAACGCTGCTCTCAAATTAAACCATCTTGATATACAGGATGATGATGCTGCATCACAGGGAGTAGTTGCTAGCAAGAAGAAAAAGAGAGGTCAACAAAGGGCTGTTGGAGGTGATAAAAGTGGAAGAGGGCTTCGCCAATTTAGCATGAAAGTTTGTGAGAAAGTAGAAAGTAAGGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAGTTTGCTGATCCGATCAATAGTGTTTTGTCTCCTGATAAGCAAACATACGATGAGAAAAACATTCGGCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCAATGGACATTATCTCTAAGGATAAAAAGGAAATACAATGGAGGGGTCTTCCTCGTACTAGTCTGAATGATATTGAAGAGCTAAAGACAGAGCGTCTTGGGCTCAGGACTAGAATTGAAAGGAAATCATCCTATCTGCAGGAGCTAGAGGAACAATTTGTAGGTCTTCAAAACCTTATTCAACGAAATGAACAGTTATATAGCTCTGGAAATCCTCCCAGCGGAGGTGTATCTTTACCCTTTATTCTGGTACAGACACGACCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTTAATAGTACTCCCTTTGAGTTGCATGACGACAATTATGTGCTAAAGGCAATGGAATTTGGTGATAGACCACAGAGTGATACTGTTACACACAATGTTACAGATGCGGGTGAAGGTTCTAGCATGTCAGGCATGCAGTCACAGGTTCCTCCTTCAGTTTCAAGCGTGTCAACTAGACCGCCCACATCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAACATTGA 1008 0.4405 MGIRPQQSVDEDDEDLLGCGTTVSGQSGSTSRSAGMPSTGTAAGDNAALKLNHLDIQDDDAASQGVVASKKKKRGQQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINSVLSPDKQTYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLNDIEELKTERLGLRTRIERKSSYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMEFGDRPQSDTVTHNVTDAGEGSSMSGMQSQVPPSVSSVSTRPPTSPPLPGILKARVKQEH 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01339 335 MobiDBLite consensus disorder prediction 282 313 - -
Vifa6g01339 335 Gene3D - 79 172 IPR036388 -
Vifa6g01339 335 SUPERFAMILY "Winged helix" DNA-binding domain 87 168 IPR036390 -
Vifa6g01339 335 Pfam Transcription factor DP 175 289 IPR014889 -
Vifa6g01339 335 SMART E2F_TDP_2 84 167 IPR003316 GO:0005667|GO:0006355
Vifa6g01339 335 MobiDBLite consensus disorder prediction 20 40 - -
Vifa6g01339 335 PIRSF Txn_factor_DP 10 335 IPR015648 GO:0005667|GO:0051726
Vifa6g01339 335 CDD DP_DD 172 275 IPR014889 -
Vifa6g01339 335 SUPERFAMILY E2F-DP heterodimerization region 173 288 IPR037241 -
Vifa6g01339 335 FunFam Transcription factor-like protein DPB 79 172 - -
Vifa6g01339 335 Gene3D Transcription factor DP 173 316 IPR038168 -
Vifa6g01339 335 PANTHER TRANSCRIPTION FACTOR DP 37 321 IPR015648 GO:0005667|GO:0051726
Vifa6g01339 335 Pfam E2F/DP family winged-helix DNA-binding domain 87 167 IPR003316 GO:0005667|GO:0006355
Vifa6g01339 335 MobiDBLite consensus disorder prediction 281 335 - -
Vifa6g01339 335 MobiDBLite consensus disorder prediction 1 45 - -
Vifa6g01339 335 Coils Coil 197 217 - -
Vifa6g01339 335 SMART DP_2 174 333 IPR014889 -
Vifa6g01339 335 FunFam Transcription factor-like protein DPB 173 297 - -
Vifa6g01339 335 MobiDBLite consensus disorder prediction 62 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01339 Vifa-Chr6 464660600 464663529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01339 56 276 E2F-DP Transcription Factor Family AT5G02470 51.802 2.05e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vifa6g01339 DP 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01339 K04683 - qsu:112000390 489.96