Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01336 ATGGGTGTTAAACAAGGTGCTGTTTTTACACCATTGAATCCTCTTAGTAGTGTTTCTGAAATTCACAAGCAGGTTAATGAGTGTGGTGTGAATTTTGCTTTTACTGTACCTGAAAATATCAAGAAACTAGAGCTATTAGCTTTTCCCGTTATTGTTGTGCCAGAGAATGAGAAGGATTTGAAGAACGATTGTTTCTCTTGTTTTTTTAGCCTTGTTTATGGTAACTTTGATTTGACTCAAAGGCCAATTATTAAGCAAGAAGATACTGCTGGTGTATTGTATTCTTCTGGGACCACAGGTGTGAGCAAAGGAGTTGTTTTAACTCATAGAAATCTTATTTCTATGGTTGAGCATTTTGTGAGATTTGAAGCTTCTCAATATGAAGACTCTTGTTCCAAGAATGTGTTTCTAGCTGTTCTGCCAATGTTTCATATATATGGTTTATCGCTCTTCGCTGTTGGATTATTGTCATTGGGTTCTACAATTGTTGTAATGAGGAAATTTGATATTTATGAGGTTATTAGAGTGATTGACAAATATAATGTTACACACTATCCTGTTGTTCCGCCGATGTTATCGGCATTGACAATGAAGGCAAAGGGTGCTAATGGAAGTAAGTTGCAGAGTTTGAGACAGGTTTCCTGCGGTGCAGCGCCTTTGAGCGCAGAAGTTAGTAATGGTTTTGTCCGTGCTTTCCCTAACATTGATTTAATACAGGGGTATGGAATGACCGAGTCGACCGCAGTAGGAACACGTGGCTTCAATACTGAAAAATTTCACGACTATTCTTCAATAGGGTTGTTAGCTCCAAACATGGAGGCAAAAGTTGTAGACTGGAACAATGGTGCCTTTTTGCCCCCAGGCAGCAGCGGCGAGCTTTGGTTGAGAGGGCCTTCAATTATGAGAGGATACTTGAATAACAAGGAAGCTACAATGTCAACAATTGATAAAGATGGTTGGCTACGTACCGGAGATATTGTTTATTTTGATCAGGATGGATATTTACATTTGTCTGACCGTTTGAAAGACATTATCAAATACAAAGGGTTTCAGATCGCTCCTGCGGACTTAGAAGCAGTGTTACTTTCGCATCCAGAAATAGTTGATGTTGCTGTTACTGCTGCCAAAGACGAAGAAGCTGGGGAGATTCCAGTAGCATTTGTGGTCAAGAAGGTCAAAAGTCTACTTTCTCCAAAGCATGTTATCGATTACGTCGCCGAGCAGGTTTCTCCATACAAGAAGGTTCGGAAAGTGTTCTTCACCGACAAGATACCTAGGTCTCCAACTGGGAAGATCCTTCGAAAGGAACTCAGGCATTACACGACTTCTAAACTTTAA 1338 0.4013 MGVKQGAVFTPLNPLSSVSEIHKQVNECGVNFAFTVPENIKKLELLAFPVIVVPENEKDLKNDCFSCFFSLVYGNFDLTQRPIIKQEDTAGVLYSSGTTGVSKGVVLTHRNLISMVEHFVRFEASQYEDSCSKNVFLAVLPMFHIYGLSLFAVGLLSLGSTIVVMRKFDIYEVIRVIDKYNVTHYPVVPPMLSALTMKAKGANGSKLQSLRQVSCGAAPLSAEVSNGFVRAFPNIDLIQGYGMTESTAVGTRGFNTEKFHDYSSIGLLAPNMEAKVVDWNNGAFLPPGSSGELWLRGPSIMRGYLNNKEATMSTIDKDGWLRTGDIVYFDQDGYLHLSDRLKDIIKYKGFQIAPADLEAVLLSHPEIVDVAVTAAKDEEAGEIPVAFVVKKVKSLLSPKHVIDYVAEQVSPYKKVRKVFFTDKIPRSPTGKILRKELRHYTTSKL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01336 445 CDD 4CL 6 437 - -
Vifa6g01336 445 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 438 - -
Vifa6g01336 445 FunFam 4-coumarate--CoA ligase 2 343 444 - -
Vifa6g01336 445 Pfam AMP-binding enzyme C-terminal domain 357 431 IPR025110 -
Vifa6g01336 445 SUPERFAMILY Acetyl-CoA synthetase-like 4 440 - -
Vifa6g01336 445 Gene3D - 343 443 IPR045851 -
Vifa6g01336 445 ProSitePatterns Putative AMP-binding domain signature. 92 103 IPR020845 -
Vifa6g01336 445 Gene3D - 2 342 IPR042099 -
Vifa6g01336 445 Pfam AMP-binding enzyme 4 347 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01336 Vifa-Chr6 464178691 464181130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01336 3 445 Monolignol Biosynthesis Gene Families AT4G19010 61.712 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01336 K01904 - gmx:100804808 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01336 6 464178691 464181130 Vifa6g01336 6 464178691 464181130 ECH